Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02238 ATGGGCGCACAGAAAAAAAGCGGTGCTAGGGTTTCAGAGGACCCCGACGAACTGGTTCGGGTTCCGTTGCAGGCCGTTCTCTTGGCCGATAGTTTCACCACCAAGTTCAGACCTATCACGCTCGAACGCCCCAAAGTGCTGCTGCCGCTCGTGAATGTTCCGATGATAAATTACACGCTCACTTGGCTCGAATCCGCTGGCGTCGAAGAGGTTTTCGTTTTCTGCTGTTCTCATTCAAAGCAGGTCATTAGCTACCTCGAGAAATCTGAGTGGCTCTCTCAACCTAATTTTACGGTAACGACTGTAGAGTCGCAGAACTCTGTCAGCGCCGGAGATGCGCTACGTGTAATTTATGAGCGCAATGTGATACATGGAGACTTTGTCCTTATCAGTGGAGATACTGTAAGCAATATGTCGCTTACTCAGGCACTTCTAGAGCATAAAGAGAGGAAGAAGAAAGATAGTAATGCTGTAATGACTATGGTCATTAAACGGTCAAAACCTAATCCAGCTATCCATCAGTCTCGACTTGGTACTGATGAACTTTTCATGGCCATTGATCCTAATACCAAGCAACTTCTGTATTATGAGGATAGGGCAGATCAATCGAAAGGAACACTACATCTTGACAAGTCATTGCTTGCTGATAATCCTTCACTCTCTCTGCATCATGACAAGCAGGATTGTTACATTGACATCTGCTCACCTGAAGTCCTTAGCCTATTTACAGACAATTTTGACTACCAGCATCTACGGCGTCATTTTGTCAAGGGATTGCTTCTTGATGATATAATGGGGTACAAAATTTTTGTTCATGAAATCCACTCAGACTATGCTGCAAGGATTGATAATTTCCGAAGCTACGACACTGTCAGCAAGGATATAATTCATCGATGGACATATCCACTGGTGCCAGATGTAATGAATTTTGGCGACACAGCTACTAAACTTGAACGACAAGGAATATACCGTGCTTCGGAAATATCACAATCACAGTCTGCTGTTATTGGCCCTTTCACTGTCATAGGATCTGGCACCAAAATTGGGCATAACACTAAAATTTTAAATTCTGTTATTGGTGAAGGATGTAAAATTGGGTCAAATGTTATCATAGAGGGATGCTATATATGGGATAACATCAGCATAGAAGATGGCTGTAAACTCCAGCATGCAATTGTATGTGATGGGGTGATTATAAAGTCAGGGGCTGTTCTGGAAcctggtgttattttgtcttttaagGTCGTAGTTGGGCCTGAGTTTGTTGTTCCTCCATATTCAAATGTATCTCTGTTACAGCAGCCAATTGAGGAAGACAGTGACGAGGAGCTTGAATATGCTGATAGTACTAGTGTCATAGGCAGCCAAGTGGATAAATCAGATGTAGAGATTGCTTCCAAAGTATTGGAGACACATTTTAGTCCTGCCTCGGAGTTGGGTATGGGTGGGGCTGGTCATGTGTGGTCAACATGTGAAGGAAGCCATGAAGAAGAGTGGAGGCATTCGGTGGCGCCTATTCCTAAAGATAAAGTTATGGAGGCAATTAAAACTATGAAAGATGATCTGGAGAATGATGATAGTTTTCTTCCACCTTCTGGAGAACTGAAACCTAATTCTAATTATTCAGATGATGATGATCATGAAGATTCTAGAGATGACTCTTACTACTTTGAGAAAGAGGTTGAAGCAACCTTTCTCAGGGCTGTGCATGAAAACATACAAGAAAGCCATTTGATCTTAGAAATCAATTCTTTGAAGTTGTCATACAATAAGCTAGCTGCTGATTGTGCTGGAGCTGTATTTTCTGCCATGATGAAGTATGCTTTAGACACCCCCCATAGTTCAGCTGATGTTTTGCTTCAAAATGTTCAGGCTGTATTTACAAAATGGAAAAAGGCTCTTACATCCTATCTGACTGACATAGATGAGCAGATCGAAGTAATACTTAAATTtgaagaaatatgtgaggaatctgctaaggaatttgctccattgttcacaaGGATTTTGCACTACTTGTACAATGAAGATGTTGTAGAAGAAGATGCTATTTTGAGTTGGGAAGCCGAGTTAAAAGATGCTGACGAGGCAGATAAAGTTTTTGTTAAGCAGGCCCAAAAGTTAATTCAATGGCTAAAAGAGGCACCTGAAGAAGACGATGATGACGAGGAATAG 2175 0.4055 MGAQKKSGARVSEDPDELVRVPLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYTLTWLESAGVEEVFVFCCSHSKQVISYLEKSEWLSQPNFTVTTVESQNSVSAGDALRVIYERNVIHGDFVLISGDTVSNMSLTQALLEHKERKKKDSNAVMTMVIKRSKPNPAIHQSRLGTDELFMAIDPNTKQLLYYEDRADQSKGTLHLDKSLLADNPSLSLHHDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFVHEIHSDYAARIDNFRSYDTVSKDIIHRWTYPLVPDVMNFGDTATKLERQGIYRASEISQSQSAVIGPFTVIGSGTKIGHNTKILNSVIGEGCKIGSNVIIEGCYIWDNISIEDGCKLQHAIVCDGVIIKSGAVLEPGVILSFKVVVGPEFVVPPYSNVSLLQQPIEEDSDEELEYADSTSVIGSQVDKSDVEIASKVLETHFSPASELGMGGAGHVWSTCEGSHEEEWRHSVAPIPKDKVMEAIKTMKDDLENDDSFLPPSGELKPNSNYSDDDDHEDSRDDSYYFEKEVEATFLRAVHENIQESHLILEINSLKLSYNKLAADCAGAVFSAMMKYALDTPHSSADVLLQNVQAVFTKWKKALTSYLTDIDEQIEVILKFEEICEESAKEFAPLFTRILHYLYNEDVVEEDAILSWEAELKDADEADKVFVKQAQKLIQWLKEAPEEDDDDEE 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02238 724 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Gma03g02238 724 Pfam Nucleotidyl transferase 25 165 IPR005835 GO:0009058|GO:0016779
Gma03g02238 724 SUPERFAMILY Nucleotide-diphospho-sugar transferases 21 369 IPR029044 -
Gma03g02238 724 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 15 303 IPR029044 -
Gma03g02238 724 Pfam eIF4-gamma/eIF5/eIF2-epsilon 643 722 IPR003307 GO:0005515
Gma03g02238 724 SMART 542_3 631 718 IPR003307 GO:0005515
Gma03g02238 724 CDD W2_eIF2B_epsilon 557 715 IPR044123 GO:0005085|GO:0031369
Gma03g02238 724 Gene3D Hexapeptide repeat proteins 308 436 - -
Gma03g02238 724 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 723 - -
Gma03g02238 724 CDD LbH_eIF2B_epsilon 341 419 - -
Gma03g02238 724 Pfam Bacterial transferase hexapeptide (six repeats) 340 373 IPR001451 -
Gma03g02238 724 MobiDBLite consensus disorder prediction 522 552 - -
Gma03g02238 724 Gene3D - 544 723 - -
Gma03g02238 724 ProSiteProfiles W2 domain profile. 551 722 IPR003307 GO:0005515
Gma03g02238 724 SUPERFAMILY Trimeric LpxA-like enzymes 266 427 IPR011004 -
Gma03g02238 724 SUPERFAMILY ARM repeat 557 715 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02238 Gma-Chr3 47661930 47671388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02238 1 715 Eukaryotic Initiation Factors Gene Family AT2G34970 64.958 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02238 K03240 - gmx:100784894 1425.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02276 19 51404152 51415312 Gma03g02238 03 47661930 47671388 GST