Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02223 ATGAAAGAAATGAAAATTTTGAATTTTCATTATTTGGGAGAATTTGATTTGGAGAAAGAGAAAAGTGTGGTAACTCTAAAAGAACTTTTAGAAGACTGCATTAGAGATACTGACAACTCTCAACAACTATCTGAATTGGCTGTTAGTTGTCCAAGCTTAAGGACACAGTTTTATTGGAGCAAGTTTTTGAAACTATGGAAAAGAAGATCTTTTAAGCACCTACCATCTTTTCCTCCGAGTTGTGTGCCAAACATAACAAAGACTAAAAACAGAACCATTCAAGAAATTTCTGTTGTATGTAATTCATACTGTTCCAGAACTTTGATGAATTTTAGTCTCGATAACCTGAGAAATGCAACCAACAATTTTAGCAATGAGAATATGATTGGAAGAGGTGGCTTTGCTGATGTTTACAAGGGTAGCCTCCAAGATGGACAACTAATAGCAGTTAAGCGACTGAATAAAGGGACTCCAGAAAACAGAACATCAAGCTTTCTGTCTGAGCTAGGCATTCTTGCTCATGTTGATCATCCTAACACTGCCAAACTTATTGGATGTGGAGTAGAAGGAGGAATGCACCTTGTCTTCGAACTATCTCCACTGGGAAATTTAGGGTCTCTTCTTCATGGTCCAAATAAAAATAAATTAGATTGGAGTAAAAGGCATAAAATTATTATGGGGATAGCGGATGGCCTTCTTTATCTTCATGAGATTTGTCAAAGGCGAATCATTCATAGAGACattaaaggagagaatattttgctcacagagaattttgagccacagATTTGTGATTTTGGGCTTGCAAAATGGTTACCAGAACTGTGTACTCACCGTAATGTATCAAAATTTGAAGGCACAATGGGGTATTTAGCTCCTGAATATTTTATGCACGGCATAGTAAGCGAGAAAACTGATATTTATTCCTTTGGGGTCTTGCTTTTGGAGATTATAACCGGGCGTCATGCTTTGGATCATCTGAAGCAAAGTATTGTGTTATGGGCCAAGCCTTTATTTGAAGCCAATAACATTAAGGACCTTGTTGATCCTTCTCTGGGTGATGATTATGACCGGGAACAAATGGATCGTGTTGTTTTGACTGCATCTCTGTGTGTTGAGCAGTATCCTATCTTACGCCCCAGCATGAGTCAGGTTGCAATACTGCTAAGAGGTGATGACTTTGTGCTGGAACATAGGAGTCACTAG 1206 0.369 MKEMKILNFHYLGEFDLEKEKSVVTLKELLEDCIRDTDNSQQLSELAVSCPSLRTQFYWSKFLKLWKRRSFKHLPSFPPSCVPNITKTKNRTIQEISVVCNSYCSRTLMNFSLDNLRNATNNFSNENMIGRGGFADVYKGSLQDGQLIAVKRLNKGTPENRTSSFLSELGILAHVDHPNTAKLIGCGVEGGMHLVFELSPLGNLGSLLHGPNKNKLDWSKRHKIIMGIADGLLYLHEICQRRIIHRDIKGENILLTENFEPQICDFGLAKWLPELCTHRNVSKFEGTMGYLAPEYFMHGIVSEKTDIYSFGVLLLEIITGRHALDHLKQSIVLWAKPLFEANNIKDLVDPSLGDDYDREQMDRVVLTASLCVEQYPILRPSMSQVAILLRGDDFVLEHRSH 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02223 401 ProSiteProfiles Protein kinase domain profile. 123 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02223 401 SUPERFAMILY Protein kinase-like (PK-like) 100 388 IPR011009 -
Gma03g02223 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Gma03g02223 401 SMART serkin_6 123 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02223 401 Pfam Protein tyrosine and serine/threonine kinase 126 332 IPR001245 GO:0004672|GO:0006468
Gma03g02223 401 ProSitePatterns Protein kinases ATP-binding region signature. 129 151 IPR017441 GO:0005524
Gma03g02223 401 Gene3D Phosphorylase Kinase; domain 1 83 197 - -
Gma03g02223 401 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 30 398 - -
Gma03g02223 401 PANTHER OS08G0249100 PROTEIN 30 398 - -
Gma03g02223 401 Gene3D Transferase(Phosphotransferase) domain 1 200 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02223 Gma-Chr3 47556379 47566552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02223 108 395 Receptor kinase-like Gene Family AT1G53420 44.932 3.54e-74 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gma03g02223 PK_Tyr_Ser-Thr 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02223 - - gmx:113001177 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma02g01373 02 15903121 15906859 Gma03g02223 03 47556379 47566552 ECH
Gma10g00224 10 2060473 2064206 Gma03g02223 03 47556379 47566552 ECH
Gma03g01370 03 39872119 39874639 Gma03g02223 03 47556379 47566552 ECH
Gma19g01436 19 43631927 43634815 Gma03g02223 03 47556379 47566552 ECH
Gma15g00942 15 7859179 7862732 Gma03g02223 03 47556379 47566552 ECH
Gma03g02223 03 47556379 47566552 Gma03g02223 03 47556379 47566552 ECH
Gma03g02223 03 47556379 47566552 Gma10g01549 10 42566487 42577405 PCT
Gma03g02223 03 47556379 47566552 Gma20g02160 20 48796298 48799585 PCT
Gma10g01549 10 42566487 42577405 Gma03g02223 03 47556379 47566552 PCT
Gma20g02160 20 48796298 48799585 Gma03g02223 03 47556379 47566552 PCT