Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02220 ATGTCGAGGAGAAAGGTCAGAGAGCCAAAGGAAGAAAACGTGACTCTGGGCCCAGCTGTTAGAGATGGTGAACATGTCTTTGGCGTCGCTCGCATCTTTGCCTCCTTCAATGATACCTTCATTCATGTCACTGATTTGTCTGGGAGGGAAACGCTTGTCCGCATCACTGGTGGAATGAAGGTTAAGGCTGACAGAGATGAATCATCTCCTTATGCTGCTATGCTTGCAGCTCAGGATGTTGCTGCCAGATGCAAGGAACTTGGCATAACTGCTCTTCATATCAAGCTCCGTGCCACTGGTGGAAACAAGACAAAGACACCTGGTCCTGGTGCTCAATCAGCTCTTCGTGCCCTTGCTCGTTCAGGAATGAAAATTGGTCGTATAGAGGATGTGACTCCCATTCCTTCGGATAGCACTCGTAGAAAGAGTGGTAGAAGGGGTAGAAGGCTTTAA 453 0.4857 MSRRKVREPKEENVTLGPAVRDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02220 150 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 2 150 IPR001971 GO:0003735|GO:0005840|GO:0006412
Gma03g02220 150 Pfam Ribosomal protein S11 28 146 IPR001971 GO:0003735|GO:0005840|GO:0006412
Gma03g02220 150 SUPERFAMILY Translational machinery components 23 148 - -
Gma03g02220 150 PANTHER BNAA05G27530D PROTEIN 2 150 - -
Gma03g02220 150 Gene3D Ribosomal protein S11 1 150 IPR036967 GO:0003735|GO:0005840|GO:0006412
Gma03g02220 150 Hamap 30S ribosomal protein S11 [rpsK]. 3 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Gma03g02220 150 MobiDBLite consensus disorder prediction 130 150 - -
Gma03g02220 150 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 1 147 IPR001971 GO:0003735|GO:0005840|GO:0006412
Gma03g02220 150 ProSitePatterns Ribosomal protein S11 signature. 115 137 IPR018102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02220 Gma-Chr3 47534081 47536114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02220 1 139 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 90.647 1.16e-92 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02220 K02955 K01000 gmx:100786325 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02260 19 51294507 51296665 Gma03g02220 03 47534081 47536114 GST