Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02207 ATGCAACTTGGCATTTTTCGGGGCACCCACATAAAAATATTTTGCATGTGTTTGCCTGAGGGAGAGAGAGGCATGGCACTAGAAGCAGTAGTGTATCCCCAACCACAGGACCCGTTTGGCCATGGGATCAAAGACCCTTCTTACAACTACAACAACTTGTTAGAAGGTGGTGGAGGCAATTGGGGCTATGCAGATTTCAACCTTGAAAAAGAAGACCGAACTTGTGTCCCTTTTCTTGCGAACCAAACAGAGAATTATCCTTATGGAGAATGGAACTGTTCTCCTTCTCCACCATCCATGTTGCCTCAATTGAATATTGCATCAAATCCTCAATCTTCAGAAACCAGCAACACACAGAACAACTTAGATAGTTCAGTTTCCACCCCTGCTCGTCCCAAAAGGCGCAGGACCAAAAGCAGAAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTATCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATAATTGGTGGTGCTATCAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAAGAGAAAGAAGCGAAATCTGATGTCCTCTTTTCTGAGTTCTTCTCCTTTCCACAGTACTCAACAAGTGCCAGTGGTGGCTGTGACAATTCTACAGCCATGAGTGAGCAAAAGAGTGAGGCTCAGTCGGGCATTGCTGACATAGAAGTGACAATGGTTGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATTGTCTCCAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACAACAGGGGAAATTGTCCTCTATTCTCTTAGCGTTAAGGTGGAAGAAGATTGCAAGCTAGGATCAGTGGATGAAATAGCTGCAGCGGTGTACCAAATTCTGGATAGGATTCAACAAGAGACAATCTCGAATTAA 1032 0.4419 MQLGIFRGTHIKIFCMCLPEGERGMALEAVVYPQPQDPFGHGIKDPSYNYNNLLEGGGGNWGYADFNLEKEDRTCVPFLANQTENYPYGEWNCSPSPPSMLPQLNIASNPQSSETSNTQNNLDSSVSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEAKSDVLFSEFFSFPQYSTSASGGCDNSTAMSEQKSEAQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLSVKVEEDCKLGSVDEIAAAVYQILDRIQQETISN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02207 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 212 IPR036638 GO:0046983
Gma03g02207 343 Coils Coil 196 216 - -
Gma03g02207 343 MobiDBLite consensus disorder prediction 99 128 - -
Gma03g02207 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 199 IPR011598 GO:0046983
Gma03g02207 343 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 25 342 - -
Gma03g02207 343 Pfam Helix-loop-helix DNA-binding domain 149 200 IPR011598 GO:0046983
Gma03g02207 343 SMART finulus 154 205 IPR011598 GO:0046983
Gma03g02207 343 PANTHER MAX DIMERIZATION, MAD 25 342 - -
Gma03g02207 343 MobiDBLite consensus disorder prediction 99 147 - -
Gma03g02207 343 CDD bHLH_AtFAMA_like 151 222 - -
Gma03g02207 343 Gene3D - 133 215 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02207 Gma-Chr3 47445947 47448104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02207 25 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.678 1.26e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g02207 HLH 8.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02207 - - gmx:100777413 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02207 03 47445947 47448104 Gma03g02207 03 47445947 47448104 ECH
Gma19g02244 19 51161057 51162598 Gma03g02207 03 47445947 47448104 GST
Gma03g02207 03 47445947 47448104 Gma10g01541 10 42504564 42506348 PCT
Gma03g02207 03 47445947 47448104 Gma20g02168 20 48839908 48841673 PCT
Gma10g01541 10 42504564 42506348 Gma03g02207 03 47445947 47448104 PCT
Gma20g02168 20 48839908 48841673 Gma03g02207 03 47445947 47448104 PCT