Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02206 ATGAAGACAGTCCTATTCCTCCTTCTGGTGTCAGCGTTAATCCCCATCGCCGTCGCGCAGCCCAATGACTTCTCCGACGCAAACCTCAACGAGTTCAACTCCTCCGTAGCCATAATCATAATCATATTAGTAGTCGCGTTTTTCCTCATGGCCTTTTTCTCCATCTACGTGCGCCACTGCGCTGATTCCCCTTCCAACACCGTCAGGCCTCTCACCACCGCACGCTCCAGGAGGGCCGCGCGTGGCCTTGACCCCGCTCTGATTCAAACATTCCCTATCCTCGAATACTCCGTTGTTAAGATCCACAAAATCGGAAAAGAAGCTTTGGAATGCGCTGTGTGTTTGTGCGAGTTCGAGGACACCGAAACGCTGCGTTTGCTCCCCAAGTGCGACCACGTTTTCCACCCCGAGTGCATCGACGAGTGGTTGAGCTCCCACACCACGTGCCCCGTGTGCCGCGCCAACCTCCTTCCCACCGAGTCCGAGGATGCTATTGCTAACGCCAACGCCAACGGTGTTGTTCCAGTTCCGGAAACGTTAACGCGAGACATCGAATCCCAAAACGACGCCGTGCAAGCCGCGCCAGAGCAGCAGAACGCGGAGGCTGACCCAGTTTTACCCGAACCGGAAGTTGTTTCCCTGGACAAAACGCTAAACCGGAACCGCACGCGAGGGTCGCGGTCGAACCGGCCGCGGAGGTTTCCCAGGTCACACTCGACTGGGCACTCGCTGGTCCAACCGGGAGAAAACACTGACCGGTTCACTTTAAAGTTGCCTTTGGAGGTGAGGAAGCAATTAATAAACCGCCAATTACAACGTGCGAGTAGCTTGATCGTGTTACCGAGGGAAGGTAGTTCGAGACAGGGTTACCGAACCGGGGGAGAAGGGAGTAGTAGAGGCAAAATCTCGAGGCGGTTGGACCGGAGTTTGAAATCGGACCGGTGGATTTTCTCAATGACTGCGCCCTTTTTTGCAAGGGCGTTGTCTATTAGATCGCCTAGGGTTCGAAACAACGATGTTGAAGGAGCGGCGTCCCCGTCGTCTCCCACCACGCCTATCATGCCGCCGACGGCCGTTGACTCGGCAAGGCCTCCGGTTTAA 1101 0.5577 MKTVLFLLLVSALIPIAVAQPNDFSDANLNEFNSSVAIIIIILVVAFFLMAFFSIYVRHCADSPSNTVRPLTTARSRRAARGLDPALIQTFPILEYSVVKIHKIGKEALECAVCLCEFEDTETLRLLPKCDHVFHPECIDEWLSSHTTCPVCRANLLPTESEDAIANANANGVVPVPETLTRDIESQNDAVQAAPEQQNAEADPVLPEPEVVSLDKTLNRNRTRGSRSNRPRRFPRSHSTGHSLVQPGENTDRFTLKLPLEVRKQLINRQLQRASSLIVLPREGSSRQGYRTGGEGSSRGKISRRLDRSLKSDRWIFSMTAPFFARALSIRSPRVRNNDVEGAASPSSPTTPIMPPTAVDSARPPV 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02206 366 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 305 - -
Gma03g02206 366 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Gma03g02206 366 PANTHER RING FINGER DOMAIN-CONTAINING 2 305 - -
Gma03g02206 366 CDD RING-H2_EL5_like 110 153 - -
Gma03g02206 366 MobiDBLite consensus disorder prediction 223 237 - -
Gma03g02206 366 MobiDBLite consensus disorder prediction 187 250 - -
Gma03g02206 366 MobiDBLite consensus disorder prediction 349 366 - -
Gma03g02206 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 158 IPR013083 -
Gma03g02206 366 Pfam Ring finger domain 110 153 IPR001841 -
Gma03g02206 366 SMART ring_2 111 152 IPR001841 -
Gma03g02206 366 SUPERFAMILY RING/U-box 103 159 - -
Gma03g02206 366 MobiDBLite consensus disorder prediction 334 366 - -
Gma03g02206 366 MobiDBLite consensus disorder prediction 284 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02206 Gma-Chr3 47423239 47424938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02206 4 348 Rapid Response to Elicitors AT3G05200 44.068 8.49e-82 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02206 K10664 - gmx:100783823 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02206 03 47423239 47424938 Gma03g02206 03 47423239 47424938 ECH
Gma19g02243 19 51139750 51141461 Gma03g02206 03 47423239 47424938 GST
Gma03g02206 03 47423239 47424938 Gma10g01540 10 42473098 42474507 PCT
Gma03g02206 03 47423239 47424938 Gma20g02169 20 48863446 48864441 PCT
Gma10g01540 10 42473098 42474507 Gma03g02206 03 47423239 47424938 PCT
Gma20g02169 20 48863446 48864441 Gma03g02206 03 47423239 47424938 PCT