Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma03g02201 | ATGAAGGCTGACGAGGATGTTAGGATGATATCAGCTGAAGCACCAGTCATTTTTGCAAGGGCATGTGAAATGTTCATATTAGAGTTAACCCTGCGCTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAGAAAAATGATATTGCTGCTGCTATCACAAGGACTGACATCTTTGATTTCTTGGTTGACATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCCCTTCCATACTGCTACATGCCGCCTCAGCATCCGTCCCAAGTTGGAGCTGCTGGTGTCATAATGGCCACCAGACCAACGACAGTCATCTCCAGAACATTAGCTGATGTGTCGTGGAAATTAAGATAA | 405 | 0.4593 | MKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGTMPVAGPADALPYCYMPPQHPSQVGAAGVIMATRPTTVISRTLADVSWKLR | 134 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma03g02201 | 134 | Gene3D | Histone, subunit A | 1 | 69 | IPR009072 | GO:0046982 | |
| Gma03g02201 | 134 | SUPERFAMILY | Histone-fold | 1 | 69 | IPR009072 | GO:0046982 | |
| Gma03g02201 | 134 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 1 | 116 | - | - | |
| Gma03g02201 | 134 | Pfam | Core histone H2A/H2B/H3/H4 | 3 | 54 | IPR007125 | GO:0003677 | |
| Gma03g02201 | 134 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 1 | 116 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma03g02201 | Gma-Chr3 | 47391684 | 47392511 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma03g02201 | 1 | 116 | CCAAT-HAP5 Transcription Factor Family | AT1G08970 | 77.586 | 7.02e-60 | 182 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | NF-YC | Gma03g02201 | CBFD_NFYB_HMF | 1.5e-11 | CL0012 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma03g02201 | K08066 | - | gmx:100782754 | 231.491 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma19g02238 | 19 | 51100240 | 51102830 | Gma03g02201 | 03 | 47391684 | 47392511 | ECH | |
| Gma03g02201 | 03 | 47391684 | 47392511 | Gma03g02201 | 03 | 47391684 | 47392511 | ECH | |
| Gma19g02238 | 19 | 51100240 | 51102830 | Gma03g02201 | 03 | 47391684 | 47392511 | GST | |
| Gma03g02201 | 03 | 47391684 | 47392511 | Gma10g01534 | 10 | 42425705 | 42426499 | PCT | |
| Gma03g02201 | 03 | 47391684 | 47392511 | Gma20g02174 | 20 | 48900555 | 48901226 | PCT | |
| Gma10g01534 | 10 | 42425705 | 42426499 | Gma03g02201 | 03 | 47391684 | 47392511 | PCT | |
| Gma20g02174 | 20 | 48900555 | 48901226 | Gma03g02201 | 03 | 47391684 | 47392511 | PCT |