Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02181 ATGTCAGATTCACAGTCCAATTCAGAGATTTTTAGCATTCGGATTGTCACCATCGACTATTACATGGCACCGCCCATCCCCGACGCTGATATCTGTTATAGCAGCTTCCACGGTGGAAAGGTGAATGAAGTGCCTGTGATAAGAGTGTATGGTCCTACTCCTGCTGGCCAGAAGACTTGCTTGCACATTCATCGAGCTTTACCCTATTTGTATGTGCCGTGTTCAGATATACCACTTCAACTGGACTCAGGTGATGCATTCACCTATAAGGTAGCTGCTTCTCTTGAGAAAGCCTTAAAGCTTAAAGGCAATGCTGGTTCAAGTAGACAACATGTACATGGATGCAGCCTTGTACGAGCAAGGAAATTTTATGGCTATCATTCACTTGAGGAGTTATTTGTAAAGATATACCTATATTATCCTCAAGATGTCTCCCGTGCAGCTAATCTTCTCTTGGCTGGTGCTGTTCTTGATAAAAGTTTACAGCCTTATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCATTTGCACCTATCAAAGATGAAGTTCCGCTACCCCATTCCTGACACTTGCAAGAAATTAAATACCGATGATCAGCATAGAAAGGCAGATTCAGATGCTCATGCATGTTTAGAGTCAAAATTGTGGATGTCTTCCACGATCTCATCTGAGTGGATGTGGTCACCCCCAAGCAAATCCGGTGCTTTGTCAAATGATGAGGCTCACTGTCCTAAACGTCAAAGTATCTGTGAGCTTGAAGGAGATACTTCTGTGGATGAGATACTTAATCAGCAATTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATGTCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAGCAACAGAAACGGAATGGGGTTCATGAGGCTACCATGCCTTCTGATCCTGGCAAACCACTACCAGAAGATGTTATGAAACTTCTCTCTGTTGGTCTTGACTTTGAGAAAAAATTTATTGAATTGTGCAGTGAAGCTGAAACCTCTTTATTTTGTACTTTTTCTGCGAAGGAATTGAGAGAAACAGACATAATAGGCTCGGCATCACCACCAGCTTCATTATGCAAAAATGCCAAATTGCATGAGGAAGGGACTGATGCAAATCTTGAAATGTTGACTATGGATGAAATCCCTTCATCTGAAATGATTGGAACATTGGACATAAAGGCAGCTGCTGATAAGGAAGCACAAAATATTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGACGATGAACTTGTTTATGAAACAATCTTGACTCCCTTGTTACCTGCTGCAACAATTGATAAGGTGCTGGAGGAAGCTAATATTGCTTATGAGAATGAGTCCCAAAAGGAGTGTCAGGATATTCTAGATTCAATTGATGATATGCTTGAGTTGGAGTTACCAAATGAAAAACCCTCTCATTCCTTGGATCACTATTGTCCTATTGGAGCTTCATCAAGCAGTATGTTACCTCAAGTTGATGGTTCTAATGATGATGAGTTCTCAAGTCCACGTGATAGTTTGGCTGGAACCTCTTCTCTAGTAGAGATAAACAGTGAATACACAAGGGCTTCTGAGCACCATGTACTGCCCAATACTGACACAAGTACACTTATTAAAGATAAAAGGAATAAACAATGGGGGTCTTTGCCTTTTTCCTCAATTGATAAAGCTAATAATGATGGAGAGCATGCTACTTTACTTGTGACTCATCCATTTGAAAGTGAGACTGGAGATTCTGCTCACTCAAATTACTTAAACAGAAATGAGGTTAGAAATGGTGCTTGTTTTATAAGGAACAAGGGCAGAGATGCTTCAGATTCCAAAGAAGTACACAAATTGGTTAACTGCTCTTTGCGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACAAGCTGACTGTGAGTCTGGAACTACTAAAAAGCTTCTTTTAGACAGGCATGAGGAACAAAATGCATGCCTTTGGCAAAAACAGCTGGATTTAAAAACAATGCAAACTGATGAAGAAGAAATGGAACACCAGAAGAATTGTGAATGTGAAGTTAGCAATCATGCTAATTTAGTGCATGGGAAAATGCCCCTTCCAGCTGGCAGTGACTGTCTTTTACAAGCTACTAGCCGGCCAAAAGATGAATATTTTGGTCAACATGAAATAGAAGGTTTGGAAGCAAGTTCAGTGTTGAGGAACTGTACAAATGGAGAGTCTGCTTTAATGCATGGGGGACCAGGCCTCCAAAAGCCTGAAAAATTATACTTAATCAATTCCATAGACCCATCTATGGTTTGTAGGGGTGAAAACCTTAAGGTTGGCACAACTTTTACAAAACCTGTAGCTTCTGATGCCTGTACCCAAAATCCCCTCTTGGACACACGGTCGAGAACAGCTTCTGTTCATACAGTCAGAGCTTCTGAGAGGACTCCACAAACTGATACTTCTGCTTCAAGTAGTGTGCAGAGCTCCTTCATTGATGATAAAGTGTCTGACAAATTCATGGATCAAAGTTCTCATGGAAGCAGATCTTTTGTGCAACATGATCAGATGACGTTTTGTGAGAATTCTGTGGAGAAAAATGCTGCAAGTGATGTGCAAGTATTGTTAAGTGAAAAAGTGGATACTCAAAAGCTGGGTGAAAATTTGTTGCATGAGACTATTAAATTAACTGAAATAACCACAGGCAAGAACCCCCTGGCTGATAAGACTCTTGAAGGTACTTTGACCTTGCCAACAACCTCTAATACCCATTTTCATTTGGATGAGGACAGCTCTGATGAAATGCCAGGGGATGTTCTGGATGACTTTCTTCCGATATCTGCAAGGGATTCTCAGAAAGGGATGGAGACTTGCAATGAGTATGTTACAGTTAAAACCCTTACATCTAATGGTACAAAGAGTGTCTCGACCCACTATCAAAATGATGGTTCTCACCTATACCTATTAACTCCTAATATTTTGCCTCCTTCTGTGGGTACTGTGCATAGATGGTTACTTTGTAACAAGAGAGGGAACATTCCTGATCATACACATCAAGAAACAGATGCAGAGGACAAGGATGTTCCAAAATGTGCTTCTGAGACTGAACCTCCTCTTAGGCCTAAGCTGTATCAAGATTCTGATACAGAAAATAAGCCTCCATGCAATGGAGAAGGACAAACAGAAAGAGTGAAAGCATGCCTAGATGACTCACAAGATATTTCTCAGATATCAGACCCTGATAGAAAATCAAGTTTTACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAATTGACATTACTTAGTATAGAGATTCTTGCAGAATGTAGAGGAGACCTTTTACCCGATCCTCAATTTGATGCCATCAACATTGTAGCTCTTGGTTTTCAGAATGACGGTGATTCTATTGTTGAAGTTCTAGTTCTTTTACATAGTAAATATGTACCTTGTCAGAGAAGTTTTGATGGTCTATTTGGCTGTAAAATATTGGTCTTCACTGATGAGAAACTCTTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTGGCAGAAAGGGCATCACATCTTGGTTTGGGATTACTTAATAATGTGTCTCGCACTCCATCTGAGTCTTTGATTGCTTCTGAAGATAGCAAAACTTATGAAAAAGATATCTTGGAACTGGACATCCATGATACCCCTAGTCGAGATTGTTGCGTGCCAGAAAATTCAATAATTGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATATAGGAGGCAGAATTGTCCTGAATGCATGGCGATTGATCCGTGGAGAAGTTAAGCTGAACTTATATTCAGTTGAAGCTGTAGCTGAATCTGTATTGAGGCGGAAAATTCCTTCATTTCATCACAAGGTGCTAACAAAATGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTTATAGAGAGAGCAAAGCTGAACCTTGAGATAATAAACCAGCTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTTTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAATCCATGTTTCTGAGGTTGGCCCATACGCAAAACTATCTTGCCATCTCACCTGGAAAACAACAGGTTGCTTCTCAGCCTGCCATGGAGTGCCTTCCCCTAGTAATGGAACCAGAATCTGGATTTTATTCAGATCCTGTTGTTGTACTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTTTGCACTTGTCTCGGTAAAGTTGTGGCATCAAAGGCCAACACACTTGGGGTTAGTTCATTCTCACCAGAGCAACATGTTCTGCAGGATTTAAAGGATCAAATCTTGCTCACTCCAAATGGTGTTATGTTTGTACCTTCGAAGGTTCGAAGAGGTATACTGCCCCGCTTATTGGAAGAAATCTTAACAACAAGAATTATGGTAAAACAAGCAATAAAAAAGTTGGCTCCTCCAGAGAAAGTTCTTCAGCGGATATTTAATGCAAGGCAGCTTGCTTTGAAGCTCATAGCGAATGTAACATATGGCTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATCGTTCAGTGTGGCCGTAGTACACTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAGAGGATGCACTGTCAAAGAGTCTTTCCAAATTGGGAGTGAGATTGCCTCTGCTATCACTGCTATGAATCCTAGCCCTGTCACCCTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTCCTTACTAAGAAAAGATATGTCGGCTACAGTTATGAAAGCCCTGATCAAATTGAACCTGTTTTTGATGCCAAGGGTATTGAGACAGTACGCAGGGACACATGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGACTCTTCTTTGAGCATCAGAATTTATTGGAGGTGAAGACTTATTTGCATCGTCAGTGGAAGAGGATTCTTTCAGGAAGAATCTGCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGAATCTCATCACTTCCTCCTGCTGCAATTGTAGCCACTAAGGCAATGACGGTTGACCCTAGGGCAGAACCACGTTATGCTGAGAGAATACCGTATGTTGTAATTCATGGAGAGCCTGGAGCTCGCCTGGTTGATATGGTTGTGGATCCATTGGAAGTTTTGGCAATTGATTCCCCATTTAGAATAAATGATTTATATTACATTAATAAACAAATAATACCAGCTTTACAGCGGGTATTTGGACTTGTTGGTGCTGACTTAAACCATTGGTTTTCAGAGATGCCCCGCCCCACAAGGGAAGCTTCTGCAAAGCATACATTAACTACAAATTTCCATCAAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGTGATAGGTTGGTTCAGGCATCAGCCCGTTTATGCAATCAATGTTCTGAAAATGAAGTAGCTGCTGCAACAGCAGTGATTAGTAAGACTTCAAAGTTAGAGCAAGAGATGCAACATCTTGTTGCTGTATGTCACCATTGTGGAGGCGGGGATAGGCTTCTGGAAAATGGTGTGAAGTGTACGTCCATTTCATGCTTGGTGTTTTATGAGAGGCGGAAGGTTCAGAAAGAACTGCTAGCTGCCACCCATGTTGCTGCAGATAAAGACTTATATCCGAGATGCACAGTGGAATGGTTCTGA 5934 0.4092 MSDSQSNSEIFSIRIVTIDYYMAPPIPDADICYSSFHGGKVNEVPVIRVYGPTPAGQKTCLHIHRALPYLYVPCSDIPLQLDSGDAFTYKVAASLEKALKLKGNAGSSRQHVHGCSLVRARKFYGYHSLEELFVKIYLYYPQDVSRAANLLLAGAVLDKSLQPYESHIPFILQFLVDYNLYGMGHLHLSKMKFRYPIPDTCKKLNTDDQHRKADSDAHACLESKLWMSSTISSEWMWSPPSKSGALSNDEAHCPKRQSICELEGDTSVDEILNQQFKMYSSLSQTCSDVNMVQSLVPIWEEQQKRNGVHEATMPSDPGKPLPEDVMKLLSVGLDFEKKFIELCSEAETSLFCTFSAKELRETDIIGSASPPASLCKNAKLHEEGTDANLEMLTMDEIPSSEMIGTLDIKAAADKEAQNILKWLATSQAAEDINSDDELVYETILTPLLPAATIDKVLEEANIAYENESQKECQDILDSIDDMLELELPNEKPSHSLDHYCPIGASSSSMLPQVDGSNDDEFSSPRDSLAGTSSLVEINSEYTRASEHHVLPNTDTSTLIKDKRNKQWGSLPFSSIDKANNDGEHATLLVTHPFESETGDSAHSNYLNRNEVRNGACFIRNKGRDASDSKEVHKLVNCSLRDLMRRKRSYRVEQADCESGTTKKLLLDRHEEQNACLWQKQLDLKTMQTDEEEMEHQKNCECEVSNHANLVHGKMPLPAGSDCLLQATSRPKDEYFGQHEIEGLEASSVLRNCTNGESALMHGGPGLQKPEKLYLINSIDPSMVCRGENLKVGTTFTKPVASDACTQNPLLDTRSRTASVHTVRASERTPQTDTSASSSVQSSFIDDKVSDKFMDQSSHGSRSFVQHDQMTFCENSVEKNAASDVQVLLSEKVDTQKLGENLLHETIKLTEITTGKNPLADKTLEGTLTLPTTSNTHFHLDEDSSDEMPGDVLDDFLPISARDSQKGMETCNEYVTVKTLTSNGTKSVSTHYQNDGSHLYLLTPNILPPSVGTVHRWLLCNKRGNIPDHTHQETDAEDKDVPKCASETEPPLRPKLYQDSDTENKPPCNGEGQTERVKACLDDSQDISQISDPDRKSSFTPLSQIGFRDPASVGCGQQLTLLSIEILAECRGDLLPDPQFDAINIVALGFQNDGDSIVEVLVLLHSKYVPCQRSFDGLFGCKILVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNVSRTPSESLIASEDSKTYEKDILELDIHDTPSRDCCVPENSIIEDEWGRTHASGVHIGGRIVLNAWRLIRGEVKLNLYSVEAVAESVLRRKIPSFHHKVLTKWFSSGPGRARYRCIKYVIERAKLNLEIINQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGKQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVASKANTLGVSSFSPEQHVLQDLKDQILLTPNGVMFVPSKVRRGILPRLLEEILTTRIMVKQAIKKLAPPEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLRGCTVKESFQIGSEIASAITAMNPSPVTLKMEKVYHPCFLLTKKRYVGYSYESPDQIEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQNLLEVKTYLHRQWKRILSGRICLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMTVDPRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNHWFSEMPRPTREASAKHTLTTNFHQTRIDYYYLSKHCVLCDRLVQASARLCNQCSENEVAAATAVISKTSKLEQEMQHLVAVCHHCGGGDRLLENGVKCTSISCLVFYERRKVQKELLAATHVAADKDLYPRCTVEWF 1977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02181 1977 SUPERFAMILY Ribonuclease H-like 36 1390 IPR012337 -
Gma03g02181 1977 ProSitePatterns DNA polymerase family B signature. 1610 1618 IPR017964 GO:0000166|GO:0003676
Gma03g02181 1977 PRINTS DNA-directed DNA-polymerase family B signature 1552 1564 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma03g02181 1977 PRINTS DNA-directed DNA-polymerase family B signature 1443 1456 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma03g02181 1977 PRINTS DNA-directed DNA-polymerase family B signature 1608 1616 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma03g02181 1977 SUPERFAMILY DNA/RNA polymerases 1430 1844 IPR043502 -
Gma03g02181 1977 Pfam DNA polymerase family B, exonuclease domain 1116 1249 IPR006133 -
Gma03g02181 1977 Pfam DNA polymerase family B, exonuclease domain 55 195 IPR006133 -
Gma03g02181 1977 MobiDBLite consensus disorder prediction 1024 1074 - -
Gma03g02181 1977 Gene3D DNA Polymerase, chain B, domain 1 30 196 - -
Gma03g02181 1977 Gene3D - 1153 1426 IPR036397 GO:0003676
Gma03g02181 1977 Gene3D Palm domain of DNA polymerase 1429 1674 IPR023211 -
Gma03g02181 1977 Gene3D Helix hairpin bin 1509 1569 - -
Gma03g02181 1977 MobiDBLite consensus disorder prediction 1025 1045 - -
Gma03g02181 1977 MobiDBLite consensus disorder prediction 1083 1102 - -
Gma03g02181 1977 MobiDBLite consensus disorder prediction 507 529 - -
Gma03g02181 1977 MobiDBLite consensus disorder prediction 807 840 - -
Gma03g02181 1977 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1969 IPR030559 GO:0006281|GO:0016035|GO:0019985
Gma03g02181 1977 CDD POLBc_zeta 1391 1839 - -
Gma03g02181 1977 CDD DNA_polB_zeta_exo 1115 1365 - -
Gma03g02181 1977 Pfam DNA polymerase family B 1384 1831 IPR006134 GO:0000166|GO:0003677
Gma03g02181 1977 SMART polmehr3 1116 1622 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma03g02181 1977 Gene3D - 1685 1852 IPR042087 -
Gma03g02181 1977 Pfam C4-type zinc-finger of DNA polymerase delta 1876 1949 IPR025687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02181 Gma-Chr3 47275881 47290701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02181 1120 1959 Core DNA Replication Machinery Family AT5G63960 28.950 1.54e-87 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02181 K02350 - gmx:100777934 3957.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02181 03 47275881 47290701 Gma03g02181 03 47275881 47290701 ECH
Gma19g02223 19 51022997 51023707 Gma03g02181 03 47275881 47290701 GST