Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma03g02180 | ATGGGTTATGGTTACGGTCCTTTCTCTCTCCTATTAAACAGACGCCTCCATCTCTCTTCTTCCCTAAACCCTAAACCCTCTTTCCCACTCCTTCACCTTCTCACCAAGCCCTTCTCCACCGCCCCACCAGACCCTAACCCTAACCCCAAACCCTCTTCCCTCTCCGCCCGTCTCAGCTTCGTCTTCGACCAAATTGATGCCATCGAAAAACAGCGCTCTCAGAAGCATGAAACGCTTCAGCGCATTCGGGCCTGGCGTGAATCCAAAAACGCCCCCCCGGAGCCGGCACTGTCCGTCTCCGCAGACGACGAAAGCCCTCCGGAGCCGCCACCCAAGAAGGCGGTGGAGTTGGTGCATCCGTGGCCGGAGTGGATCCAATTGATGGAGATGCTCGTACACCAGAATTACTTCGATCACAAAAGGAGGGACGAGGATAAAATGGTCCACGACTTAGGATTCAATGCACCCGAGGTTGCTGAAGGATTCGATTTCACTAAGGATTTTAAGAGCGTTCACATGGCGTGTCTCAGTTTCGGGAGAGACCGTTTTGATATATTGAGGTCCTTGTCAAGGAAGGATATTCAAGTTTTGGTTGGTTATGGATGCCCCACTGTGGACAGAAAAGTGGTTTTCTCTGCAAAACTTTTAAGGAAGCATGTTCACCTTGACGAAGGAGATGTCTGTAGTTCCTGCAGCTTGAGAAGCAATTGTGAAAGGGGGTATTTGCTAACAAACAAAGAGGATGAGGCACGGACTCTTGATGTCATGAGGCTCCTGCTGACTTTTGGTTTTGATCCTGTTGATGGATCAGTGATCAATAAGTCACTTCTAAAGCAGAAGTCTGTGAAAACAGTGGTTCGTAAATTGCTTCATGAGGTTGTCAAGCTGAGTTCAGTTCCCATTGATCCAAATCTTCCTCCTCCGGTGATTAAAAAACCACCACCAAAAGTGAAACAACCTCCTCCTCCTCCAAAGAGACGTGTTGGGCGGGATGACGTTGAGATGAAAAGAGGGGACTGGCTGTGTCCTAAGTGTGAATTCATGAATTTTGCAAAGAATACTGTTTGCTTACAGTGTGATGCCAAGCGTCCTAAGAGACAGTTGCTGCCAGGAGAATGGGAGTGCCCCAAGTGCAATTTCTTGAATTACAGAAGGAATATGGTATGCTTCCATTGTGAGTGTAAACGGCCACCTGATGAGTTTCTGGAGAATAAAATGCAAGATAGAATACAGAATTCCAAACCTAAGTTGGATAAGAAGGGCAGCCGACAAGAGGTTTCCAATGCCTGGAATTTTGACTTTGATGACAATGAATCAGATGGTGCAGATGTAGCTGCTTTTGAGTATGCAGATACTCATGCTATAGATGAGAATTCAGATAATCATGCTCAACGTGGAAATGATAGGGGGTGGGAAGATGATTTTGAGAAGAACAACAGAGTGCAAGGGTCCCCTGATGGAGAATATGCTAATCCTGGTCTTTATAGATCTAGAACAGGGTTTGATGATTTTGAGGATGAAGATGATATAGATAGTTATGAGCTAGAAACTGCTCAAAATAGTAGTAAAAGAGTGGAAGAATCTAAATATAATTTCTCAGAAGGTGAAAACTTTTCTGAATCGGAAGATATTGAAGGCACTGATGATAAGATGCATGCACGACACAAAACAGCTTCTGGAAGAAGTGTTCAGTCCCGATCAATTCGCAAGAATACGTCTTTCTCTGGGTCCAAGGATGATGAACTTGATTTTGGTACCGATGAACAACTGTCTGTGGTCTCCAATTTCAAATATGGGCACGTTTCTGCTTCTGACAGAAAAAGAAAAGGCAGAGGTCCTTCCAAGAAATTAAGCTTTGGTTCTGAATCTGAGGAAGACATGGGTGGTGGCTTATACTCTGATGAGGATGGTGACTTAAATGAAGAATATTCATTTAGGAAAAATAAAGGGAACAAAGGTGATCCTTGCAGACAAAATAAGGGGAATAGACACGATTCTGGAAGAAGGAACTTTACCAAAGACAGGAAGTCAGGATCTATTGGTGGTCGCCGAGCAAATATGCTCAGTGATGATTTTGatggatcatcccagcagtcttataggaacagtaggggCGCTACCAATGATAAAGGATTCATGGCACCAACGAAGAAACCTAGAACTATGAAGAATAAGCGGTTTTCAAGTGAAGTCTCTACCAAGAAAGATGAAGTCGGCTCAAGTAAAAATAAGCAACGGAAGAAAAATATGTCTGATGAATTAGGACCTAAATGGAAAGCCGGAGAACTAAACCAGTTTTATGAAGCGTACAGGAAGCACGGGAAAGACTGGACCAAGGTGGCTGAAATTGTATCTAGTAGATCTGCTAAAATGGTGGAGGCCCTTTACAATATCAGTAAGGCATACCTATCTCTGCCAAAGGAGTCAGCTTCTGCTGTTGGCCTAATTGCAATGATCACAGATCACTATAGTATGGTGGAAGAGAGTGATAGTGAAAGGGAGAGAAATGATGTACCAGGATCTCGACAACCTATGAAACGAAAGTGTGGAAAAATTCAGCTTAGTATATCCAATGATTCTGTCCAATCTCAGTCAATTGCTTCCAAGGATGGTTGCCTTTCTCTATTAAAGAAAAGACAATTTGATGGTATCCCACCTTGGCCAGTTGCGAAAAGGACGCCTCGTTTCCCAGTTAACGACTCTAAGCCTGATGATAGGGAAAATTATGTTTTGCCTAATAAGAGAAACCCAAAGTCAATGTTTGATGCTAATGATGACGAAGCTGCACATGTTGTGACTATGGCATCAACTGAGGCTGCACAAAGAGGTGTCTCTCCCCGTGAATCTCAAAATCCATACAAAAAATCAAAGCAGGAGTTCTCTCTGGTTCAGAGTGGGCAAATAATGCACCAAGAGTCTGAGACAGTTCCTGCCAAGTTTTATGATGCTTCTATTGATGAAGAGTACTTGAAAGGTAGTATAGAAGGTGGGGGAGCTGAAGGGCAATGTCATCCTGGGGGATTAAAGGAAGAAAAAATGGCTCACAAAAAAGATGAGAAGTCTGTTTTACCTGAAGGAAAATCAACAAGGCAAAACAGAGATAAAATTAAACTTCAGGGTTTGAAACAGAAGGTTGATCATGCAGTCCCTGGAGTTGGTTCATCAACTAAACATAGAAGTAGACGTAAGACGATTTTACAGAGACCATTCACACCTAAAGAGAAATCTTCTGAGAAAATATTGAAAAGTAAACAGAATAAGAATTTGACCCCGGTCCACGGTGGGGCATTAAACATTTTAGTTGGTACGTATCAGGAAAAGCTTTCTGGTTGTTTGTCATCTTATATGGTTCGTCGATGGTGTATGTTTGAATGGTTTTATAGCGCAATTGATTATCCATGGTTTTCCAAAAGGGAGTTCATGGAATACTTAAATCATGTTGATCTAGGGAGAATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATTAGAAGTTCCCTTGGCAAACCTCGCAGGTTTTCAGAACGCTTTCTTCACGGAGAAAGACAAAAACTTGAACAGTATCGTGAATCCGTTCGGAAATATTACGATGAACTGCGGACTGGTATCAGGGATGGACTTCCAACAGATTTGTCTAAGCCGTTATGTGTTGGACAACGAGTAATTGCTTTCCACTCGAAAAAAACAAGAGAGATTCATGATGGCAGTGTGCTTACAGTTGACCATGACAATTACAGAGTTCAGTTTGACCGTCCTGAATTGGGTGTTGATTCTGTCATGGACATTGATTGCATGCCTTTGAATCCATTGGATACTATGCCAGAAACTCTGAGGCAGCAGATTAGTGCTAGTAATGTTCCTCGCATAAGTAAAAAACCACACAAGAAAGGAAATTCACGCTTTGGGGGGAACATGACATATAATTCAAGTGGACCTGTGGAGAAGGCACCCACCTCTTCAAGTACTTTAGCATTAGCTAAGCCCAAAAAGGCACTGTCACCGGGGAAATTGTTATTGGAACTTAAAAATGCAAATAGTGAGATAGTGGGAAACCAAAATGATGCAGACTGCTTTAATGATCGGAGGCTTTCAAGAAGCATTACGCCACATGTTATACAGCTTAAGGAAGCCAGTGGACAGGCATGTGGCTTCCGTGGATTATTGAAACATAATACAGAGCACATCAGAAACTCTCCGCCACCACAGATGAATCCCAAAGCAAGTTTTGACAATCATGACAGCCTTCCCAATACAATGGATGGTTCTCTGGTGCAAGAGTTAGGGTCAGCTGTTGAAATTATTAAAGGATCCAAACTTAGAGCACATGCTATGGTGGATGCTGCATTTCAGGCATTGTCTTCGACGAAGGAAGGTGAAGATGCTTTGACGAGGATTGAACAGGCATTGGATTGTGCGGATAATCAGCAGCTGGCAACCAACTCAAGGTTACCTGTGATTAGGTCCCAAGGGCAAATTAGTGGAAGTTTTGATTACCATAATCGGTCAATTTCTCATCCATCGAAGCCTCTACTCAATAATGCATCTGGTAGAAAACTGCATAATGATTCTGACAAAGTTAATACTCAAATTCTCCTGGACCTCATCACTTCCTGTGTCGCCACAGGGATCACGATACAGACTTGTGCCAACCAACAATGTCCTCCAGCTGATGTGACTCCAATATTTGATACTGCTGTTACCATCCTGCATCCACGCAGTCTACGAAATTTTCATGTTTACAGAGATATTCAAATGCACATGCAAAGAATTAAGAGCCAGATTTTAGCCCATATCAATAATTGA | 4803 | 0.4254 | MGYGYGPFSLLLNRRLHLSSSLNPKPSFPLLHLLTKPFSTAPPDPNPNPKPSSLSARLSFVFDQIDAIEKQRSQKHETLQRIRAWRESKNAPPEPALSVSADDESPPEPPPKKAVELVHPWPEWIQLMEMLVHQNYFDHKRRDEDKMVHDLGFNAPEVAEGFDFTKDFKSVHMACLSFGRDRFDILRSLSRKDIQVLVGYGCPTVDRKVVFSAKLLRKHVHLDEGDVCSSCSLRSNCERGYLLTNKEDEARTLDVMRLLLTFGFDPVDGSVINKSLLKQKSVKTVVRKLLHEVVKLSSVPIDPNLPPPVIKKPPPKVKQPPPPPKRRVGRDDVEMKRGDWLCPKCEFMNFAKNTVCLQCDAKRPKRQLLPGEWECPKCNFLNYRRNMVCFHCECKRPPDEFLENKMQDRIQNSKPKLDKKGSRQEVSNAWNFDFDDNESDGADVAAFEYADTHAIDENSDNHAQRGNDRGWEDDFEKNNRVQGSPDGEYANPGLYRSRTGFDDFEDEDDIDSYELETAQNSSKRVEESKYNFSEGENFSESEDIEGTDDKMHARHKTASGRSVQSRSIRKNTSFSGSKDDELDFGTDEQLSVVSNFKYGHVSASDRKRKGRGPSKKLSFGSESEEDMGGGLYSDEDGDLNEEYSFRKNKGNKGDPCRQNKGNRHDSGRRNFTKDRKSGSIGGRRANMLSDDFDGSSQQSYRNSRGATNDKGFMAPTKKPRTMKNKRFSSEVSTKKDEVGSSKNKQRKKNMSDELGPKWKAGELNQFYEAYRKHGKDWTKVAEIVSSRSAKMVEALYNISKAYLSLPKESASAVGLIAMITDHYSMVEESDSERERNDVPGSRQPMKRKCGKIQLSISNDSVQSQSIASKDGCLSLLKKRQFDGIPPWPVAKRTPRFPVNDSKPDDRENYVLPNKRNPKSMFDANDDEAAHVVTMASTEAAQRGVSPRESQNPYKKSKQEFSLVQSGQIMHQESETVPAKFYDASIDEEYLKGSIEGGGAEGQCHPGGLKEEKMAHKKDEKSVLPEGKSTRQNRDKIKLQGLKQKVDHAVPGVGSSTKHRSRRKTILQRPFTPKEKSSEKILKSKQNKNLTPVHGGALNILVGTYQEKLSGCLSSYMVRRWCMFEWFYSAIDYPWFSKREFMEYLNHVDLGRIPRLTRVEWSVIRSSLGKPRRFSERFLHGERQKLEQYRESVRKYYDELRTGIRDGLPTDLSKPLCVGQRVIAFHSKKTREIHDGSVLTVDHDNYRVQFDRPELGVDSVMDIDCMPLNPLDTMPETLRQQISASNVPRISKKPHKKGNSRFGGNMTYNSSGPVEKAPTSSSTLALAKPKKALSPGKLLLELKNANSEIVGNQNDADCFNDRRLSRSITPHVIQLKEASGQACGFRGLLKHNTEHIRNSPPPQMNPKASFDNHDSLPNTMDGSLVQELGSAVEIIKGSKLRAHAMVDAAFQALSSTKEGEDALTRIEQALDCADNQQLATNSRLPVIRSQGQISGSFDYHNRSISHPSKPLLNNASGRKLHNDSDKVNTQILLDLITSCVATGITIQTCANQQCPPADVTPIFDTAVTILHPRSLRNFHVYRDIQMHMQRIKSQILAHINN | 1600 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma03g02180 | 1600 | SMART | sant | 754 | 802 | IPR001005 | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 304 | 322 | - | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 453 | 584 | - | - | |
Gma03g02180 | 1600 | SUPERFAMILY | Homeodomain-like | 755 | 802 | IPR009057 | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 453 | 481 | - | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 827 | 848 | - | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 897 | 912 | - | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 558 | 572 | - | - | |
Gma03g02180 | 1600 | PANTHER | LIN-9 | 1007 | 1056 | IPR010561 | GO:0006351|GO:0017053 | |
Gma03g02180 | 1600 | SMART | DIRP_2 | 1126 | 1227 | IPR033471 | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 596 | 756 | - | - | |
Gma03g02180 | 1600 | PANTHER | PROTEIN ALWAYS EARLY 1-RELATED | 1052 | 1599 | IPR028306 | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 304 | 332 | - | - | |
Gma03g02180 | 1600 | CDD | SANT | 757 | 792 | IPR001005 | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 639 | 680 | - | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 690 | 706 | - | - | |
Gma03g02180 | 1600 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 336 | 365 | IPR001876 | - | |
Gma03g02180 | 1600 | Pfam | Zn-finger in Ran binding protein and others | 337 | 364 | IPR001876 | - | |
Gma03g02180 | 1600 | Pfam | Zn-finger in Ran binding protein and others | 370 | 397 | IPR001876 | - | |
Gma03g02180 | 1600 | Pfam | DIRP | 1125 | 1225 | IPR033471 | - | |
Gma03g02180 | 1600 | Gene3D | - | 367 | 398 | - | - | |
Gma03g02180 | 1600 | Gene3D | - | 328 | 366 | - | - | |
Gma03g02180 | 1600 | Pfam | Myb-like DNA-binding domain | 757 | 792 | IPR001005 | - | |
Gma03g02180 | 1600 | ProSitePatterns | Zinc finger RanBP2-type signature. | 373 | 392 | IPR001876 | - | |
Gma03g02180 | 1600 | ProSiteProfiles | SANT domain profile. | 753 | 788 | IPR017884 | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 83 | 113 | - | - | |
Gma03g02180 | 1600 | Coils | Coil | 1178 | 1198 | - | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 884 | 920 | - | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 1048 | 1075 | - | - | |
Gma03g02180 | 1600 | SMART | zf_4 | 338 | 362 | IPR001876 | - | |
Gma03g02180 | 1600 | SMART | zf_4 | 371 | 395 | IPR001876 | - | |
Gma03g02180 | 1600 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 369 | 398 | IPR001876 | - | |
Gma03g02180 | 1600 | ProSitePatterns | Zinc finger RanBP2-type signature. | 340 | 359 | IPR001876 | - | |
Gma03g02180 | 1600 | PANTHER | LIN-9 | 713 | 1001 | IPR010561 | GO:0006351|GO:0017053 | |
Gma03g02180 | 1600 | PANTHER | LIN-9 | 1052 | 1599 | IPR010561 | GO:0006351|GO:0017053 | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 1301 | 1322 | - | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 723 | 755 | - | - | |
Gma03g02180 | 1600 | Gene3D | - | 695 | 808 | - | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 1289 | 1322 | - | - | |
Gma03g02180 | 1600 | PANTHER | PROTEIN ALWAYS EARLY 1-RELATED | 713 | 1001 | IPR028306 | - | |
Gma03g02180 | 1600 | PANTHER | PROTEIN ALWAYS EARLY 1-RELATED | 1007 | 1056 | IPR028306 | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 1013 | 1032 | - | - | |
Gma03g02180 | 1600 | MobiDBLite | consensus disorder prediction | 827 | 844 | - | - | |
Gma03g02180 | 1600 | SUPERFAMILY | Ran binding protein zinc finger-like | 329 | 365 | IPR036443 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma03g02180 | Gma-Chr3 | 47258531 | 47274475 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma03g02180 | 8 | 638 | EF-hand Containing Proteins | AT1G55040 | 55.341 | 0.0 | 617 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Gma03g02180 | DIRP | 1.8e-30 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma03g02180 | - | - | gmx:102669955 | 1355.5 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma03g02180 | 03 | 47258531 | 47274475 | Gma03g02180 | 03 | 47258531 | 47274475 | ECH | |
Gma19g02222 | 19 | 51013738 | 51021465 | Gma03g02180 | 03 | 47258531 | 47274475 | GST |