Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02180 ATGGGTTATGGTTACGGTCCTTTCTCTCTCCTATTAAACAGACGCCTCCATCTCTCTTCTTCCCTAAACCCTAAACCCTCTTTCCCACTCCTTCACCTTCTCACCAAGCCCTTCTCCACCGCCCCACCAGACCCTAACCCTAACCCCAAACCCTCTTCCCTCTCCGCCCGTCTCAGCTTCGTCTTCGACCAAATTGATGCCATCGAAAAACAGCGCTCTCAGAAGCATGAAACGCTTCAGCGCATTCGGGCCTGGCGTGAATCCAAAAACGCCCCCCCGGAGCCGGCACTGTCCGTCTCCGCAGACGACGAAAGCCCTCCGGAGCCGCCACCCAAGAAGGCGGTGGAGTTGGTGCATCCGTGGCCGGAGTGGATCCAATTGATGGAGATGCTCGTACACCAGAATTACTTCGATCACAAAAGGAGGGACGAGGATAAAATGGTCCACGACTTAGGATTCAATGCACCCGAGGTTGCTGAAGGATTCGATTTCACTAAGGATTTTAAGAGCGTTCACATGGCGTGTCTCAGTTTCGGGAGAGACCGTTTTGATATATTGAGGTCCTTGTCAAGGAAGGATATTCAAGTTTTGGTTGGTTATGGATGCCCCACTGTGGACAGAAAAGTGGTTTTCTCTGCAAAACTTTTAAGGAAGCATGTTCACCTTGACGAAGGAGATGTCTGTAGTTCCTGCAGCTTGAGAAGCAATTGTGAAAGGGGGTATTTGCTAACAAACAAAGAGGATGAGGCACGGACTCTTGATGTCATGAGGCTCCTGCTGACTTTTGGTTTTGATCCTGTTGATGGATCAGTGATCAATAAGTCACTTCTAAAGCAGAAGTCTGTGAAAACAGTGGTTCGTAAATTGCTTCATGAGGTTGTCAAGCTGAGTTCAGTTCCCATTGATCCAAATCTTCCTCCTCCGGTGATTAAAAAACCACCACCAAAAGTGAAACAACCTCCTCCTCCTCCAAAGAGACGTGTTGGGCGGGATGACGTTGAGATGAAAAGAGGGGACTGGCTGTGTCCTAAGTGTGAATTCATGAATTTTGCAAAGAATACTGTTTGCTTACAGTGTGATGCCAAGCGTCCTAAGAGACAGTTGCTGCCAGGAGAATGGGAGTGCCCCAAGTGCAATTTCTTGAATTACAGAAGGAATATGGTATGCTTCCATTGTGAGTGTAAACGGCCACCTGATGAGTTTCTGGAGAATAAAATGCAAGATAGAATACAGAATTCCAAACCTAAGTTGGATAAGAAGGGCAGCCGACAAGAGGTTTCCAATGCCTGGAATTTTGACTTTGATGACAATGAATCAGATGGTGCAGATGTAGCTGCTTTTGAGTATGCAGATACTCATGCTATAGATGAGAATTCAGATAATCATGCTCAACGTGGAAATGATAGGGGGTGGGAAGATGATTTTGAGAAGAACAACAGAGTGCAAGGGTCCCCTGATGGAGAATATGCTAATCCTGGTCTTTATAGATCTAGAACAGGGTTTGATGATTTTGAGGATGAAGATGATATAGATAGTTATGAGCTAGAAACTGCTCAAAATAGTAGTAAAAGAGTGGAAGAATCTAAATATAATTTCTCAGAAGGTGAAAACTTTTCTGAATCGGAAGATATTGAAGGCACTGATGATAAGATGCATGCACGACACAAAACAGCTTCTGGAAGAAGTGTTCAGTCCCGATCAATTCGCAAGAATACGTCTTTCTCTGGGTCCAAGGATGATGAACTTGATTTTGGTACCGATGAACAACTGTCTGTGGTCTCCAATTTCAAATATGGGCACGTTTCTGCTTCTGACAGAAAAAGAAAAGGCAGAGGTCCTTCCAAGAAATTAAGCTTTGGTTCTGAATCTGAGGAAGACATGGGTGGTGGCTTATACTCTGATGAGGATGGTGACTTAAATGAAGAATATTCATTTAGGAAAAATAAAGGGAACAAAGGTGATCCTTGCAGACAAAATAAGGGGAATAGACACGATTCTGGAAGAAGGAACTTTACCAAAGACAGGAAGTCAGGATCTATTGGTGGTCGCCGAGCAAATATGCTCAGTGATGATTTTGatggatcatcccagcagtcttataggaacagtaggggCGCTACCAATGATAAAGGATTCATGGCACCAACGAAGAAACCTAGAACTATGAAGAATAAGCGGTTTTCAAGTGAAGTCTCTACCAAGAAAGATGAAGTCGGCTCAAGTAAAAATAAGCAACGGAAGAAAAATATGTCTGATGAATTAGGACCTAAATGGAAAGCCGGAGAACTAAACCAGTTTTATGAAGCGTACAGGAAGCACGGGAAAGACTGGACCAAGGTGGCTGAAATTGTATCTAGTAGATCTGCTAAAATGGTGGAGGCCCTTTACAATATCAGTAAGGCATACCTATCTCTGCCAAAGGAGTCAGCTTCTGCTGTTGGCCTAATTGCAATGATCACAGATCACTATAGTATGGTGGAAGAGAGTGATAGTGAAAGGGAGAGAAATGATGTACCAGGATCTCGACAACCTATGAAACGAAAGTGTGGAAAAATTCAGCTTAGTATATCCAATGATTCTGTCCAATCTCAGTCAATTGCTTCCAAGGATGGTTGCCTTTCTCTATTAAAGAAAAGACAATTTGATGGTATCCCACCTTGGCCAGTTGCGAAAAGGACGCCTCGTTTCCCAGTTAACGACTCTAAGCCTGATGATAGGGAAAATTATGTTTTGCCTAATAAGAGAAACCCAAAGTCAATGTTTGATGCTAATGATGACGAAGCTGCACATGTTGTGACTATGGCATCAACTGAGGCTGCACAAAGAGGTGTCTCTCCCCGTGAATCTCAAAATCCATACAAAAAATCAAAGCAGGAGTTCTCTCTGGTTCAGAGTGGGCAAATAATGCACCAAGAGTCTGAGACAGTTCCTGCCAAGTTTTATGATGCTTCTATTGATGAAGAGTACTTGAAAGGTAGTATAGAAGGTGGGGGAGCTGAAGGGCAATGTCATCCTGGGGGATTAAAGGAAGAAAAAATGGCTCACAAAAAAGATGAGAAGTCTGTTTTACCTGAAGGAAAATCAACAAGGCAAAACAGAGATAAAATTAAACTTCAGGGTTTGAAACAGAAGGTTGATCATGCAGTCCCTGGAGTTGGTTCATCAACTAAACATAGAAGTAGACGTAAGACGATTTTACAGAGACCATTCACACCTAAAGAGAAATCTTCTGAGAAAATATTGAAAAGTAAACAGAATAAGAATTTGACCCCGGTCCACGGTGGGGCATTAAACATTTTAGTTGGTACGTATCAGGAAAAGCTTTCTGGTTGTTTGTCATCTTATATGGTTCGTCGATGGTGTATGTTTGAATGGTTTTATAGCGCAATTGATTATCCATGGTTTTCCAAAAGGGAGTTCATGGAATACTTAAATCATGTTGATCTAGGGAGAATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATTAGAAGTTCCCTTGGCAAACCTCGCAGGTTTTCAGAACGCTTTCTTCACGGAGAAAGACAAAAACTTGAACAGTATCGTGAATCCGTTCGGAAATATTACGATGAACTGCGGACTGGTATCAGGGATGGACTTCCAACAGATTTGTCTAAGCCGTTATGTGTTGGACAACGAGTAATTGCTTTCCACTCGAAAAAAACAAGAGAGATTCATGATGGCAGTGTGCTTACAGTTGACCATGACAATTACAGAGTTCAGTTTGACCGTCCTGAATTGGGTGTTGATTCTGTCATGGACATTGATTGCATGCCTTTGAATCCATTGGATACTATGCCAGAAACTCTGAGGCAGCAGATTAGTGCTAGTAATGTTCCTCGCATAAGTAAAAAACCACACAAGAAAGGAAATTCACGCTTTGGGGGGAACATGACATATAATTCAAGTGGACCTGTGGAGAAGGCACCCACCTCTTCAAGTACTTTAGCATTAGCTAAGCCCAAAAAGGCACTGTCACCGGGGAAATTGTTATTGGAACTTAAAAATGCAAATAGTGAGATAGTGGGAAACCAAAATGATGCAGACTGCTTTAATGATCGGAGGCTTTCAAGAAGCATTACGCCACATGTTATACAGCTTAAGGAAGCCAGTGGACAGGCATGTGGCTTCCGTGGATTATTGAAACATAATACAGAGCACATCAGAAACTCTCCGCCACCACAGATGAATCCCAAAGCAAGTTTTGACAATCATGACAGCCTTCCCAATACAATGGATGGTTCTCTGGTGCAAGAGTTAGGGTCAGCTGTTGAAATTATTAAAGGATCCAAACTTAGAGCACATGCTATGGTGGATGCTGCATTTCAGGCATTGTCTTCGACGAAGGAAGGTGAAGATGCTTTGACGAGGATTGAACAGGCATTGGATTGTGCGGATAATCAGCAGCTGGCAACCAACTCAAGGTTACCTGTGATTAGGTCCCAAGGGCAAATTAGTGGAAGTTTTGATTACCATAATCGGTCAATTTCTCATCCATCGAAGCCTCTACTCAATAATGCATCTGGTAGAAAACTGCATAATGATTCTGACAAAGTTAATACTCAAATTCTCCTGGACCTCATCACTTCCTGTGTCGCCACAGGGATCACGATACAGACTTGTGCCAACCAACAATGTCCTCCAGCTGATGTGACTCCAATATTTGATACTGCTGTTACCATCCTGCATCCACGCAGTCTACGAAATTTTCATGTTTACAGAGATATTCAAATGCACATGCAAAGAATTAAGAGCCAGATTTTAGCCCATATCAATAATTGA 4803 0.4254 MGYGYGPFSLLLNRRLHLSSSLNPKPSFPLLHLLTKPFSTAPPDPNPNPKPSSLSARLSFVFDQIDAIEKQRSQKHETLQRIRAWRESKNAPPEPALSVSADDESPPEPPPKKAVELVHPWPEWIQLMEMLVHQNYFDHKRRDEDKMVHDLGFNAPEVAEGFDFTKDFKSVHMACLSFGRDRFDILRSLSRKDIQVLVGYGCPTVDRKVVFSAKLLRKHVHLDEGDVCSSCSLRSNCERGYLLTNKEDEARTLDVMRLLLTFGFDPVDGSVINKSLLKQKSVKTVVRKLLHEVVKLSSVPIDPNLPPPVIKKPPPKVKQPPPPPKRRVGRDDVEMKRGDWLCPKCEFMNFAKNTVCLQCDAKRPKRQLLPGEWECPKCNFLNYRRNMVCFHCECKRPPDEFLENKMQDRIQNSKPKLDKKGSRQEVSNAWNFDFDDNESDGADVAAFEYADTHAIDENSDNHAQRGNDRGWEDDFEKNNRVQGSPDGEYANPGLYRSRTGFDDFEDEDDIDSYELETAQNSSKRVEESKYNFSEGENFSESEDIEGTDDKMHARHKTASGRSVQSRSIRKNTSFSGSKDDELDFGTDEQLSVVSNFKYGHVSASDRKRKGRGPSKKLSFGSESEEDMGGGLYSDEDGDLNEEYSFRKNKGNKGDPCRQNKGNRHDSGRRNFTKDRKSGSIGGRRANMLSDDFDGSSQQSYRNSRGATNDKGFMAPTKKPRTMKNKRFSSEVSTKKDEVGSSKNKQRKKNMSDELGPKWKAGELNQFYEAYRKHGKDWTKVAEIVSSRSAKMVEALYNISKAYLSLPKESASAVGLIAMITDHYSMVEESDSERERNDVPGSRQPMKRKCGKIQLSISNDSVQSQSIASKDGCLSLLKKRQFDGIPPWPVAKRTPRFPVNDSKPDDRENYVLPNKRNPKSMFDANDDEAAHVVTMASTEAAQRGVSPRESQNPYKKSKQEFSLVQSGQIMHQESETVPAKFYDASIDEEYLKGSIEGGGAEGQCHPGGLKEEKMAHKKDEKSVLPEGKSTRQNRDKIKLQGLKQKVDHAVPGVGSSTKHRSRRKTILQRPFTPKEKSSEKILKSKQNKNLTPVHGGALNILVGTYQEKLSGCLSSYMVRRWCMFEWFYSAIDYPWFSKREFMEYLNHVDLGRIPRLTRVEWSVIRSSLGKPRRFSERFLHGERQKLEQYRESVRKYYDELRTGIRDGLPTDLSKPLCVGQRVIAFHSKKTREIHDGSVLTVDHDNYRVQFDRPELGVDSVMDIDCMPLNPLDTMPETLRQQISASNVPRISKKPHKKGNSRFGGNMTYNSSGPVEKAPTSSSTLALAKPKKALSPGKLLLELKNANSEIVGNQNDADCFNDRRLSRSITPHVIQLKEASGQACGFRGLLKHNTEHIRNSPPPQMNPKASFDNHDSLPNTMDGSLVQELGSAVEIIKGSKLRAHAMVDAAFQALSSTKEGEDALTRIEQALDCADNQQLATNSRLPVIRSQGQISGSFDYHNRSISHPSKPLLNNASGRKLHNDSDKVNTQILLDLITSCVATGITIQTCANQQCPPADVTPIFDTAVTILHPRSLRNFHVYRDIQMHMQRIKSQILAHINN 1600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02180 1600 SMART sant 754 802 IPR001005 -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 304 322 - -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 453 584 - -
Gma03g02180 1600 SUPERFAMILY Homeodomain-like 755 802 IPR009057 -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 453 481 - -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 827 848 - -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 897 912 - -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 558 572 - -
Gma03g02180 1600 PANTHER LIN-9 1007 1056 IPR010561 GO:0006351|GO:0017053
Gma03g02180 1600 SMART DIRP_2 1126 1227 IPR033471 -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 596 756 - -
Gma03g02180 1600 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1052 1599 IPR028306 -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 304 332 - -
Gma03g02180 1600 CDD SANT 757 792 IPR001005 -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 639 680 - -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 690 706 - -
Gma03g02180 1600 ProSiteProfiles Zinc finger RanBP2 type profile. 336 365 IPR001876 -
Gma03g02180 1600 Pfam Zn-finger in Ran binding protein and others 337 364 IPR001876 -
Gma03g02180 1600 Pfam Zn-finger in Ran binding protein and others 370 397 IPR001876 -
Gma03g02180 1600 Pfam DIRP 1125 1225 IPR033471 -
Gma03g02180 1600 Gene3D - 367 398 - -
Gma03g02180 1600 Gene3D - 328 366 - -
Gma03g02180 1600 Pfam Myb-like DNA-binding domain 757 792 IPR001005 -
Gma03g02180 1600 ProSitePatterns Zinc finger RanBP2-type signature. 373 392 IPR001876 -
Gma03g02180 1600 ProSiteProfiles SANT domain profile. 753 788 IPR017884 -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 83 113 - -
Gma03g02180 1600 Coils Coil 1178 1198 - -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 884 920 - -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 1048 1075 - -
Gma03g02180 1600 SMART zf_4 338 362 IPR001876 -
Gma03g02180 1600 SMART zf_4 371 395 IPR001876 -
Gma03g02180 1600 ProSiteProfiles Zinc finger RanBP2 type profile. 369 398 IPR001876 -
Gma03g02180 1600 ProSitePatterns Zinc finger RanBP2-type signature. 340 359 IPR001876 -
Gma03g02180 1600 PANTHER LIN-9 713 1001 IPR010561 GO:0006351|GO:0017053
Gma03g02180 1600 PANTHER LIN-9 1052 1599 IPR010561 GO:0006351|GO:0017053
Gma03g02180 1600 MobiDBLite consensus disorder prediction 1301 1322 - -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 723 755 - -
Gma03g02180 1600 Gene3D - 695 808 - -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 1289 1322 - -
Gma03g02180 1600 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 713 1001 IPR028306 -
Gma03g02180 1600 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1007 1056 IPR028306 -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 1013 1032 - -
Gma03g02180 1600 MobiDBLite consensus disorder prediction 827 844 - -
Gma03g02180 1600 SUPERFAMILY Ran binding protein zinc finger-like 329 365 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02180 Gma-Chr3 47258531 47274475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02180 8 638 EF-hand Containing Proteins AT1G55040 55.341 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma03g02180 DIRP 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02180 - - gmx:102669955 1355.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02180 03 47258531 47274475 Gma03g02180 03 47258531 47274475 ECH
Gma19g02222 19 51013738 51021465 Gma03g02180 03 47258531 47274475 GST