Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02176 ATGTGCATGCATACACACATACATAGTTCAATTAATAATTTGTATGACGCTTGTGCAGATCCAAGTGCTGAAGTCATAGCTCTATCACCAAACACCCTAGTGGCCACAAACAGGTTCGTATGTGAAATATGCAACAAAGGGTTTCAAAGGGACCAAAACCTTCAATTGCACCGACGAGGCCATAATCTACCGTGGAAGCTGAAACTGAGAACCACGACTGATGTTCGAAAACGGGTTTATGTTTGTCCAGAACCCTCATGTGTGCACCACAACCCAGCTCGTGCACTAGGTGATCTTACTGGCATTAAAAAGCACTTTAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAGAAGTGCTCAAAGAAATATGCTGTTCAGTCTGATTGGAAAGCCCATTCGAAAATATGTGGAACAAAGGAATACAAATGTGACTGTGGCACCATCTTTTCTAGAAGAGATAGTTTCATCACCCACAGAGCTTTCTGCGATGCACTGAGTGAGGAGAACAACAAGTTCAACGAAGGACAATTGCCAAAGATGCATGGTTCAAACTTGCAACCACCAACAATAATCCCAAACCTAGTTGCATCATTACCAATCAATGGCGCCAATAATCACAAGCACCCACTATCACTCCCTCACGACCTCATGACAACAATTCCCGCAAAACCCTTTAACAACAACATGGCTGCAGCATTCACGAGAAGCCTTTCATCCACCTCTCAACTAAGCTCAAAATCACCAAACATTAACATGTTCGAGGAAAATGGTCTCCTTTCACCTCACATGTCCGCCACAGCATTGCTCCAAAAAGCTGCAGAAATGGGTGCAACAGTGAATAGTAACAGCAACAACAACAGCATGATGATGAGTGGAGAAAAAAGCTTTATTAATGTCACAAGCATGGCACCACCATCATATGGGATCATGAACCCCAACATGCACAACGGTCAACAAGACTTGTCTCAGTATAATTTCATTGCCAATGGGGTGGTGGATGGTGGTAGCAATGGCATGGGAATGAGTGGTTTGGATATGTTTAATGCTATATTGGATCAAAGTAAGGCCTTGTCGAAGATCATAGAGCAGAACAATCGAAGCAGTACTTATAATGGTGTTTTGCATGCAATGAATAATGGTAGGTCAAGTGGTTCCATTGAAGTTGGTGGAACTAAAGAGAGTGAAGATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGTGGTGGTGGTGGTGGTGATGGTAATTTCTATGGTGGTGATCAACAGTTAGAAATGGTTGGTGGAGATGGAATATGGGGAAATTGGTCAAATAAGAATGCAGGGCTTGAATCATTTTCAGCAACAAACAGCACCATATGA 1365 0.43 MCMHTHIHSSINNLYDACADPSAEVIALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTDVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSEENNKFNEGQLPKMHGSNLQPPTIIPNLVASLPINGANNHKHPLSLPHDLMTTIPAKPFNNNMAAAFTRSLSSTSQLSSKSPNINMFEENGLLSPHMSATALLQKAAEMGATVNSNSNNNSMMMSGEKSFINVTSMAPPSYGIMNPNMHNGQQDLSQYNFIANGVVDGGSNGMGMSGLDMFNAILDQSKALSKIIEQNNRSSTYNGVLHAMNNGRSSGSIEVGGTKESEDVMTLDLLGIGGGGGGGGDGNFYGGDQQLEMVGGDGIWGNWSNKNAGLESFSATNSTI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02176 454 SUPERFAMILY beta-beta-alpha zinc fingers 38 135 IPR036236 -
Gma03g02176 454 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Gma03g02176 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 61 IPR013087 -
Gma03g02176 454 Pfam Zinc finger, C2H2 type 39 61 IPR013087 -
Gma03g02176 454 Gene3D Classic Zinc Finger 94 172 - -
Gma03g02176 454 SMART c2h2final6 115 135 IPR013087 -
Gma03g02176 454 SMART c2h2final6 39 61 IPR013087 -
Gma03g02176 454 SMART c2h2final6 80 110 IPR013087 -
Gma03g02176 454 Gene3D Classic Zinc Finger 35 62 - -
Gma03g02176 454 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 408 - -
Gma03g02176 454 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 18 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02176 Gma-Chr3 47211628 47214596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02176 20 278 IDZ Gene Family AT3G50700 53.947 9.39e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g02176 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02176 - - gmx:100776872 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02220 19 50978597 50982834 Gma03g02176 03 47211628 47214596 ECH
Gma03g02176 03 47211628 47214596 Gma03g02176 03 47211628 47214596 ECH
Gma19g02220 19 50978597 50982834 Gma03g02176 03 47211628 47214596 GST
Gma03g02176 03 47211628 47214596 Gma10g01507 10 42174695 42178237 PCT
Gma03g02176 03 47211628 47214596 Gma20g02198 20 49099534 49103482 PCT