Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02163 ATGGACATTGCTTCTCTCGAGAAGTTTCTTCAAGAGAGGATCAAGGTTGGTGGCAAAGCTGGTGCTCTTGGTGACTCTGTTACCGTTACACGTGAGAAGACTAAGATTATTCTCACCTCTGACTGTAACTTTTCCAAACGGTATTTGAAGTACTTGACGAAGAAGTACTTGAAGAAACACAATGTGCGAGACTGGCTCAGAGTGATTGCTTCAAACAAGGATAGAAGTGTTTACGAACTGAGagcattcggtaaagagcgaggaagagaaaaaaggaagtga 282 0.3652 MDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKIILTSDCNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRAFGKERGREKRK 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02163 93 Pfam Ribosomal L22e protein family 1 84 IPR002671 GO:0003735|GO:0005840|GO:0006412
Gma03g02163 93 Gene3D - 1 93 IPR038526 -
Gma03g02163 93 PANTHER 60S RIBOSOMAL PROTEIN L22 1 84 IPR002671 GO:0003735|GO:0005840|GO:0006412
Gma03g02163 93 PANTHER 60S RIBOSOMAL PROTEIN L22-2 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02163 Gma-Chr3 47099253 47102862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02163 1 83 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 85.542 7.61e-38 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02163 K02891 - gmx:100305556 152.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02203 19 50847813 50849216 Gma03g02163 03 47099253 47102862 ECH
Gma03g02163 03 47099253 47102862 Gma03g02163 03 47099253 47102862 ECH
Gma19g02203 19 50847813 50849216 Gma03g02163 03 47099253 47102862 GST
Gma03g02163 03 47099253 47102862 Gma10g01492 10 42025291 42026506 PCT
Gma03g02163 03 47099253 47102862 Gma20g02212 20 49228517 49229892 PCT