LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g02153	ATGGGGCATTTTTCCTCAATGTTCAATGGGTTGGCACGGTCTTTTTCAATGAAGAAAGGAAGAAGGAATGGGAAATGTGGGGGGAGGGAAGCTGCTGAAGCAATGGCAAAGGAAGCTAAGAAGAATGACATGATGTTGTGTAGCTCTGGCATTGTTCATGTCGATGGTTCAAACAACTTTGCCTCCGTTTTCTCCAAAAGAGGCCAGAAAGGAGTGAACCAAGATTGCTGCATGGTGTGGGAGGAATTTGGATGCCAAGAGGACATGATATTTTGTGGGATATTTGATGGGCATGGACCATGGGGTCACTTTGTGGCCAAAAGAATAAGAGAGTCAATGCCACCATCTTTGCTATGCAACTGGCAGGAGACATTAGCCCAAACTTCAATTGATCATCCGGCTATTGATGTAGAGGAAGAGAAAAGTAAACATTACAGATTCAACATATGGAAGCATTCTTACTTGAAGACTTGTGCTGCCATTGATCAAGAACTAGAGCAATATCGCAAGATAGACTCGTTTTACAGCGGAACAACTGCCCTATCAATTGTTAGACAGggtgaactcattgtcatagcaaatgttggcgactctcgtgctgtattggctacaacatcagatgatggaagtctggtaccagttcaactaacaatcgatttcaagccaaatttaccacaggaggcagagagaataattcagtgccaggggcgtgtgttctgcttagaggacgagccaggggtgcatagggtgtggttaccggatgaagagtctccgggactagccatgtctagggcctttggtgactactgcatcaaagggcatggtcttatttctgtgcctgaggtaacacacagaaatataactagtagagaccagtttgttgtgctagccactgatgggGTTTGGGATGTAATCTCTAATAAAGAAGCAGTGGATATTGTATCTTCAGCAGCAGATAAAGCTAAGGCAGCTAAACGTTTGGTGGAGTGTGCGGTGCATGCATGGAAACGCAAGAGACGGGGCATTGCCGTGGATGACATTTCAGCTATTTGTCTCTTCTTTCACTCTTCTTCCCTTTCAACAGGGCAAGTTAGCCAGGTTGCCACATTAAAATAG	1116	0.3029	MGHFSSMFNGLARSFSMKKGRRNGKCGGREAAEAMAKEAKKNDMMLCSSGIVHVDGSNNFASVFSKRGQKGVNQDCCMVWEEFGCQEDMIFCGIFDGHGPWGHFVAKRIRESMPPSLLCNWQETLAQTSIDHPAIDVEEEKSKHYRFNIWKHSYLKTCAAIDQELEQYRKIDSFYSGTTALSIVRQGELIVIANVGDSRAVLATTSDDGSLVPVQLTIDFKPNLPQEAERIIQCQGRVFCLEDEPGVHRVWLPDEESPGLAMSRAFGDYCIKGHGLISVPEVTHRNITSRDQFVVLATDGVWDVISNKEAVDIVSSAADKAKAAKRLVECAVHAWKRKRRGIAVDDISAICLFFHSSSLSTGQVSQVATLK	371

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma03g02153	371	SMART	PP2C_4	51	352	IPR001932	-
Gma03g02153	371	PANTHER	ALPHABET, ISOFORM E-RELATED	1	361	-	-
Gma03g02153	371	PANTHER	CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C	1	361	-	-
Gma03g02153	371	Pfam	Protein phosphatase 2C	85	332	IPR001932	-
Gma03g02153	371	CDD	PP2Cc	59	354	IPR001932	-
Gma03g02153	371	ProSiteProfiles	PPM-type phosphatase domain profile.	60	354	IPR001932	-
Gma03g02153	371	SUPERFAMILY	PP2C-like	56	355	IPR036457	-
Gma03g02153	371	Gene3D	-	52	357	IPR036457	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g02153	Gma-Chr3	46987672	46991487	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma03g02153	1	355	PP2C-type Phosphatase Gene Family	AT3G05640	72.269	0.0	550

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g02153	-		-	gmx:100801309	742.265

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma19g02188	19	50698028	50699904	Gma03g02153	03	46987672	46991487	GST
Gma03g02153	03	46987672	46991487	Gma10g01483	10	41942456	41944429	PCT
Gma03g02153	03	46987672	46991487	Gma20g02218	20	49317688	49321397	PCT
Gma10g01483	10	41942456	41944429	Gma03g02153	03	46987672	46991487	PCT
Gma20g02218	20	49317688	49321397	Gma03g02153	03	46987672	46991487	PCT

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