Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02139 ATGTCTAACACCAGCAACAATGTAAGTGCAGAATTCCGTCGATGGTTTTGGAGAATTCTTTTTTCTTTTCAAATTATTAACATGATTAGCTTGAATCAGGTCGCTGGGGTCGACAACACATTCAGAAGAAAATTTGATCGAGAAGAGTATCTGGAACGAGCACGGGAGCGCGAGAGACAGGAGGAAGAAGGTCGAGCGAAACCTAAAGGTAAAGGTCCTCCCGTGCAGAGGAAGCCCTTGAAACATAGAGATTATGAAGTGGACCTTGAATCCCGCTTGGGCAAGACTCAGGTTGTTACGCCGGTTGCACCGCTAAGTCAGCAGgctggATACTACTGCTCAGTTTGTGAGTGTGTGGTAAAGGACTCTGCAAACTACTTGGATCATATTAATGGAAAGAAACATCAAAGAGCTTTAGGCATGTCTATGCGAGTAGAACGTGCTTCTCTCGAACAGGTTCAGGAACGATTTGAAGTTCTTAAGAAGCGTAAAGATGTTGGCAGCTTCACAGAGCAAGATCTTGATGAGCGGATTTTAAAACAGCAGCAAGAAGAGGAAGAAAGAAAGCGACTGCGTCGAGAAAAGAAAAAAGAAAAGAAGGAGAAGGCAGTTGAAGAACCTGAAATTGATCCTGATGTTGCTGCCATGATGGGATTTGGAGGTTTCCGGTCATCCAACAAGAAATGA 687 0.4352 MSNTSNNVSAEFRRWFWRILFSFQIINMISLNQVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKGKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKDVGSFTEQDLDERILKQQQEEEERKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSNKK 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02139 228 MobiDBLite consensus disorder prediction 183 209 - -
Gma03g02139 228 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 34 227 IPR040107 GO:0000398|GO:0005681
Gma03g02139 228 Coils Coil 174 206 - -
Gma03g02139 228 Pfam Zinc-finger of C2H2 type 111 135 - -
Gma03g02139 228 Gene3D Classic Zinc Finger 106 143 - -
Gma03g02139 228 MobiDBLite consensus disorder prediction 183 228 - -
Gma03g02139 228 SMART ZnF_U1_5 108 142 IPR003604 GO:0003676|GO:0008270
Gma03g02139 228 Coils Coil 143 163 - -
Gma03g02139 228 MobiDBLite consensus disorder prediction 53 70 - -
Gma03g02139 228 SUPERFAMILY beta-beta-alpha zinc fingers 107 152 IPR036236 -
Gma03g02139 228 MobiDBLite consensus disorder prediction 53 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02139 Gma-Chr3 46870376 46874862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02139 28 173 C2H2 Transcription Factor Family AT3G05760 80.822 1.66e-84 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g02139 zf-C2H2_jaz 2.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02139 K12848 - gmx:100795833 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02139 03 46870376 46874862 Gma03g02139 03 46870376 46874862 ECH
Gma19g02172 19 50569484 50572809 Gma03g02139 03 46870376 46874862 GST