Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02130 ATGAGTTCTTCGCTACCTCAAGTTGCCAAGAACAAAGCAATGTGGCTGCATCCTAAGGTTTTGGGTTTTAATCCTCCTGAAAGATGGGGCCACTCTGCTTGCTTCTCCAACGGGCTTATGTATGTCTTTGGGGGTTGCTGTGGGGGACTGCATTTTTGCGATGTTCTCACATTGGACCTTAACAAAATGGTTTGGAGCAAGCTTACTACCACAGGTGAAAAGCCAGGGCCAAGAGATAGCCATAGTGCTGTTTTTGTGGGGCATAAAATGATAGTGTTTGGTGGCACAAATGGCTTCAAGAAGATGAATCACATTCATGTACTTGATCTCGTTACCAAAGAGTGGGTTCGACCTGAGTGTAAAGGGACTCCTCCTTCTCCACGTGAAAGCCATACTGCCACACTTGTTGGTGATGAAAGAATAGTGATATTTGGTGGTAGTGGAGAAGGTCATGCTAACTATTTAAACGATTTGCATATTCTTGATCTTCGAACCATGAGTTGGACTTCCCCTGAGTTGAAAGGTGATTTTCCTGTCCCTAGGGACAGTCATAGTACCCTTGCAATTGGGAACAAGCTTATTGTGTATGGTGGAGACTCCGGTGATCAGTATCATGGCAACGTTCATATGCTTGATATGACAACAATGACTTGGTCTAAATTGTCTATTCAAGGTTCTCCACCAGGAGTCAGGGCAGGTCATGCTGCAGTGAACATTGGAACAAAGGTCTATATCATTGGAGGAGTTGGAGATAAACGTTACTATAATGACGTTTGGATCTTTGATATCTGCAATTTTACATGGACTCAACTTGATATAGATTTTCACCAGCCACAAGGGCGATTTTCTCATACAGCTGTTGCTGCTGGCATGGATATTGCAATATATGGCGGGTGTGGTGAAGATGAACGTCCTCTCAATGAATTGTTAGTGTTGCAGCTTGGAGCAGAGCATCCAAATGGACGTTACTACATTCCCATGTGCAAACCTTTTGGAACTTATTGGAATCAAGAAAAGAAGATTATCCCAGGAGAAGCAGATACTCACTCGAAAACTTTACTCGTGAGGAATAATGTGGAAACTTTTGGACAAGGAGCTTATGAGGTTGCATCAGAAAAATCGCCACCTTATCACTTTGATTCAGATACTTCACGACAGAAGAGGGGGAGAATTGCTGCTGCAAAGGTGTGGGATGTTAAATCAGAGCAAGAAGAAAACTTTCTTACATTGTCCCTTCATTCGTCTCCATGTCAATCCGATCAAGAACAGACACCAAGTCAAAAAGCAAATACATTATTTCCATCTACTTGCCAACACGACAATGGCTCAAATTATAAGAGAACTTTTAAAACTTCACAAGATCTTCATTTCCTACGACATCAACTAAAACAGGAACATTGCCTTAATGTTCATGAGGGTAGAAAAAGAGCTCAACTTCAGGGTGCAGAGCAGAAAACCATGGGGCAAGGATCCATTCAACACCTGATTGGTGCTGAAGTTGGGGGGAGAGTTGATGAACCCTTTGACTCAGTTTCCCTCTCTCCTGCAGCTGTGAATGGAAGGATTTTCAGGGGAGTCATATTTTCACCCGGAGCAGGAGTTGTCTCAAAAGTGGCCAATGTCAAACCAAATTGTTCTCTAACAAGTTCTTTTCCTTCTTCCTCTCAAGCATTTTTGAACTCTAATCATGTGGGTAATTCAAGGGCTTCCCAACAAGCACCTATTCGTTTGCGTGCAGAGCCATGTCATGGTTCACGGCAAACCCCAGTGGCATTACCATTTCCAATCATGCGAGGCACTTCAAATGTTGTTTCCAAAGAGCATAAAATCAATAGTGACCTTCAAGGGGGGTTGGTTTTAACACTTGGAGGACCTGCTAGTGCACATCCTCAGGATTCAAATGGTGTTGGACACGTCCAAGTAGCTGCATTACCAAAGGACCCATTGCTGGCCATGAAGCTGACAACTGTTAGCCCAGTATTTGACAATTTCCTCAAGGTCTTCTTGGAAAAGAAAAGTCGTTGTGCAGACCCCAGTGGAGGAAGTGATGGAAGCAGTTTACAGCTGGAAGCTCCTCAACAGAATAATGTAACCGAGTCATCATCAGATATGTCAGATCGGATGATCAAGATCCAGATCGCAAATCACCCTCTTTATCCAGATTTACTCTCTGCATATATAGAATGCCAAAAGGTTGGAGCACCGCCGGAACTGGCATGCCTTCTTGAAGAAATAGGCCGAGAAAGCCACCGCATGAATGCTCGCCGTGAGATTGTGGAGGGTCCTGAACTTGACCACTTCATGGAAACATTCTGCGAAGTTCTTCATAGATACAAGGAGGAGTTGTCCAGGCCCTTCAATGAAGCGACGTTATTTTTGGGTGACATGGAATCACAACTCAGCAACCTTTGTAATGGAACACTAACAAAGTCATCGGATAACAACAACCGCTCCGATGAGGTAGCTAGTGGGGCATCAGAAGAGGAATTAAGTTGTGGGGAGATGGAAGCATTTGAAGATCATGTATCTTCTTCTGTAACTTGCCCAAGTGATCAAAGGCTTAAAGAAATGCTCCTTCGCAAATACAGCGGCCATTTTAGCGGTTTGAGAAAGGAATTTCTAAAACGAAGAAAAAAGGGTAAGCTACCAAAGGATGCAAGGATAGCACTCATGGACTGGTGGAACACCCATCATAGATGGCCTTATCCTACGGAAGAGGAGAAAGTGAAGTTGTCAGAAATTACTGGACTGGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGAAAACGTCATTGGAAACCAACTGATGACATGCGATCTGCCGTTATGGACGGCATAAGAGGACCTATGTTGTTTTAA 2865 0.4353 MSSSLPQVAKNKAMWLHPKVLGFNPPERWGHSACFSNGLMYVFGGCCGGLHFCDVLTLDLNKMVWSKLTTTGEKPGPRDSHSAVFVGHKMIVFGGTNGFKKMNHIHVLDLVTKEWVRPECKGTPPSPRESHTATLVGDERIVIFGGSGEGHANYLNDLHILDLRTMSWTSPELKGDFPVPRDSHSTLAIGNKLIVYGGDSGDQYHGNVHMLDMTTMTWSKLSIQGSPPGVRAGHAAVNIGTKVYIIGGVGDKRYYNDVWIFDICNFTWTQLDIDFHQPQGRFSHTAVAAGMDIAIYGGCGEDERPLNELLVLQLGAEHPNGRYYIPMCKPFGTYWNQEKKIIPGEADTHSKTLLVRNNVETFGQGAYEVASEKSPPYHFDSDTSRQKRGRIAAAKVWDVKSEQEENFLTLSLHSSPCQSDQEQTPSQKANTLFPSTCQHDNGSNYKRTFKTSQDLHFLRHQLKQEHCLNVHEGRKRAQLQGAEQKTMGQGSIQHLIGAEVGGRVDEPFDSVSLSPAAVNGRIFRGVIFSPGAGVVSKVANVKPNCSLTSSFPSSSQAFLNSNHVGNSRASQQAPIRLRAEPCHGSRQTPVALPFPIMRGTSNVVSKEHKINSDLQGGLVLTLGGPASAHPQDSNGVGHVQVAALPKDPLLAMKLTTVSPVFDNFLKVFLEKKSRCADPSGGSDGSSLQLEAPQQNNVTESSSDMSDRMIKIQIANHPLYPDLLSAYIECQKVGAPPELACLLEEIGRESHRMNARREIVEGPELDHFMETFCEVLHRYKEELSRPFNEATLFLGDMESQLSNLCNGTLTKSSDNNNRSDEVASGASEEELSCGEMEAFEDHVSSSVTCPSDQRLKEMLLRKYSGHFSGLRKEFLKRRKKGKLPKDARIALMDWWNTHHRWPYPTEEEKVKLSEITGLDQKQINNWFINQRKRHWKPTDDMRSAVMDGIRGPMLF 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02130 954 Pfam KNOX1 domain 709 750 IPR005540 GO:0003677|GO:0005634
Gma03g02130 954 SMART HOX_1 875 940 IPR001356 GO:0003677
Gma03g02130 954 Gene3D - 872 945 - -
Gma03g02130 954 SMART KNOX1_2 707 751 IPR005540 GO:0003677|GO:0005634
Gma03g02130 954 Pfam Kelch motif 128 181 - -
Gma03g02130 954 MobiDBLite consensus disorder prediction 804 821 - -
Gma03g02130 954 SUPERFAMILY Kelch motif 73 315 IPR015915 GO:0005515
Gma03g02130 954 MobiDBLite consensus disorder prediction 804 826 - -
Gma03g02130 954 SMART ELK_2 853 874 IPR005539 GO:0003677
Gma03g02130 954 Pfam ELK domain 853 874 IPR005539 GO:0003677
Gma03g02130 954 Gene3D - 120 363 IPR015915 GO:0005515
Gma03g02130 954 Pfam Galactose oxidase, central domain 38 85 - -
Gma03g02130 954 Pfam Kelch motif 231 271 IPR006652 GO:0005515
Gma03g02130 954 ProSiteProfiles 'Homeobox' domain profile. 873 936 IPR001356 GO:0003677
Gma03g02130 954 Gene3D - 12 119 IPR015915 GO:0005515
Gma03g02130 954 SUPERFAMILY Homeodomain-like 875 945 IPR009057 -
Gma03g02130 954 PANTHER KELCH REPEAT DOMAIN 1 628 - -
Gma03g02130 954 SMART KNOX2_2 754 805 IPR005541 GO:0003677|GO:0005634
Gma03g02130 954 Pfam KNOX2 domain 758 804 IPR005541 GO:0003677|GO:0005634
Gma03g02130 954 ProSiteProfiles ELK domain profile. 853 873 IPR005539 GO:0003677
Gma03g02130 954 ProSitePatterns 'Homeobox' domain signature. 911 934 IPR017970 GO:0000981|GO:0006355
Gma03g02130 954 PANTHER OS01G0300900 PROTEIN 1 628 - -
Gma03g02130 954 Pfam Homeobox KN domain 893 932 IPR008422 GO:0003677|GO:0006355
Gma03g02130 954 CDD homeodomain 876 936 IPR001356 GO:0003677
Gma03g02130 954 MobiDBLite consensus disorder prediction 679 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02130 Gma-Chr3 46804368 46826019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02130 697 953 Homeobox Transcription Factor Family AT1G23380 52.075 2.90e-75 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma03g02130 Kelch_4 2.8e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02130 K20285 - gmx:100814299 1311.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02130 03 46804368 46826019 Gma03g02130 03 46804368 46826019 ECH
Gma19g02166 19 50531283 50537101 Gma03g02130 03 46804368 46826019 GST
Gma03g02130 03 46804368 46826019 Gma10g01452 10 41636580 41641713 PCT
Gma03g02130 03 46804368 46826019 Gma20g00946 20 36115073 36119889 PCT
Gma10g01452 10 41636580 41641713 Gma03g02130 03 46804368 46826019 PCT
Gma20g00946 20 36115073 36119889 Gma03g02130 03 46804368 46826019 PCT