Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02109 ATGGGGTCTAATCTTAATGCTGAATTATCCAAGAAAACTCCCATTTTTGGTCTAAAAGTTTGGGAAATATTTGGAATTGTAGTTGGATTGTCTATAATAGTCATTCTTTCTGTGGTCTCACTTTGCCTAACCTCAAGGAAGAAATCTAGAAAAGATAAAGACAAGATTCCCCTTAGTCAAATACCAACTGTCTCAAAGGAAATCAAGGAAGTGCGGGTTGAACAAGTGCCAACTAATGTATTTGCTCCTCGTGATGGAATACTTCTCACGATTCAGGATAAGTCCAGTGACAAGGAATCAGACAAGGTCATGGTTCATTTAGGTGTGGGGAAGATGAAGAATGGAGATAGTGGCACTCACTCAGATTCATTTCATTACATTGAGAAAGATGGAGGCGTTTCACACTCACAGTCAGGAGAAGAAGGTAGCTCTGGCACGGTTACAGTGTACAAGCAATCTTCTTCATACCCTATAACAGCTCCTTCACCTCTATCTGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTGAACTTGCTACGAACCGTTTTTCCAAAGAAAATGTCCTCGGTGAAGGCGGCTATGGAGTGGTTTATAGGGGACAGTTGATCAATGGAACTCCAGTGGCAGTTAAAAAGATACTTAATAACACAGGTCAAGCAGAGAAAGAATTTAGAGTAGAAGTTGAAGCTATTGGCCATGTCCGACACAAAAACTTGGTTCGACTTTTGGGGTACTGCATTGAGGGAACTCACAGGATGTTAGTTTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCGTCACCATGGATACCTTACGTGGGAAGCACGTATCAAGATTCTCCTTGGCACAGCCAAAGCGCTAGCGTATTTGCATGAAGCAATTGAGCCAAAGGTGGTGCACCGTGATGTAAAGTCAAGCAACATATTAATTGATGATGATTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAATTATTGGGTGCTGGGAAGAGTTATGTCACAACAAGAGTTATGGGAACTTTTGGatatgtggctcctgaatatgcaaatactggccttctaaatgagaagagtgatgtttatagctttggtgttttgctattggaaggaattactggtagagatccagttgactatggtcgaccagCAAATGAAGTGAACCTTGTTGATTGGCTGAAAATGATGGTTGGAAACAGGAGATCAGAAGAAGTGGTGGACCCCAACATTGAGGTGAAGCCATCCACCAGAGCTTTAAAACGGGCTCTCTTAACTGCTTTAAGATGTGTAGATCCAGATTCTGAGAAAAGGCCCAAGATGGGCCAAGTTGTACGAATGTTGGAGTCAGAGGAATACCCTTTACCAAGAGAGGACCGAAGACACCGAAGAAGAAATCGAGAGGGTAGTGGAGAAATTGAGTCCCAGAAGGAATATTCTGACACAGACAGGAGTGAGATTCAGGATTCAAGAGAAGAAAGAAGAGGGTGA 1533 0.3933 MGSNLNAELSKKTPIFGLKVWEIFGIVVGLSIIVILSVVSLCLTSRKKSRKDKDKIPLSQIPTVSKEIKEVRVEQVPTNVFAPRDGILLTIQDKSSDKESDKVMVHLGVGKMKNGDSGTHSDSFHYIEKDGGVSHSQSGEEGSSGTVTVYKQSSSYPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYRGQLINGTPVAVKKILNNTGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDVKSSNILIDDDFNAKVSDFGLAKLLGAGKSYVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPANEVNLVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPLPREDRRHRRRNREGSGEIESQKEYSDTDRSEIQDSREERRG 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02109 510 ProSiteProfiles Protein kinase domain profile. 191 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02109 510 PANTHER OS01G0323000 PROTEIN 3 508 - -
Gma03g02109 510 MobiDBLite consensus disorder prediction 449 510 - -
Gma03g02109 510 Pfam Protein kinase domain 192 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02109 510 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 508 - -
Gma03g02109 510 SMART serkin_6 191 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02109 510 Gene3D Phosphorylase Kinase; domain 1 173 266 - -
Gma03g02109 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Gma03g02109 510 CDD STKc_IRAK 197 463 - -
Gma03g02109 510 Gene3D Transferase(Phosphotransferase) domain 1 267 478 - -
Gma03g02109 510 ProSitePatterns Protein kinases ATP-binding region signature. 197 220 IPR017441 GO:0005524
Gma03g02109 510 SUPERFAMILY Protein kinase-like (PK-like) 175 471 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02109 Gma-Chr3 46633692 46638861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02109 168 465 Trihelix Transcription Factor Family AT1G70460 49.835 2.10e-91 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gma03g02109 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02109 - - gmx:100787014 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02109 03 46633692 46638861 Gma03g02109 03 46633692 46638861 ECH
Gma03g02109 03 46633692 46638861 Gma02g02281 02 48882565 48890421 PCT
Gma10g01424 10 41310815 41315191 Gma03g02109 03 46633692 46638861 PCT
Gma20g00917 20 35708347 35713021 Gma03g02109 03 46633692 46638861 PCT