Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02098 ATGCCTCTGCATGAGTTATACCGTGTGGCTAAAGGGAAACTTGATGATCCAATAGAGATGAACAACAACACCACATGTGCAGTTGATCAATCTTCTGTACCCAACAATGATTTGTTTGAGTTGATTTGGGAAAAGGGCCAGATTTCAGTGCAGGGTCAGTCCAGTAGAGCTAGAGTGAGCCCAAATTGTAAAACTTTGCCATCTCACACTCCAATAGGATATGCTAATAATGCTATTACTACCAATACAAGGATGGGGAAGTGTGGGAATTTAGGTGCTGAATTGAATGAAATTAGAAGGCTAGTCCCATCAGGTGAAGTGGATTTGAGTGAAGAAGAGGAAGACATGGTGATGCCTTGGTTCAGTTATGGAAGGGATGATGACTCTTTGCAACATGGATATAGTACTGATTTTTTCCATGAACCATCTGGGGTCATGAATGAGCTTTCAGCATCAAATAATTTTTCTTTGCTAGATAGAAGAAATAATTGTAGTAAGATATTTAGGGACACTCATAAACACTCTCCATTTGCATCCGTTAGATCCAGGGTAGCAGATATAGCTGAAAACAATGCAAATAACGTTCCATCTGGATCAAGTGGTTTTTCTAGCTTAAAGATGGAGAAGCAAGGTCCAGTTATGTGTAGCAATAATAGTTCCACCATGATGAATTTTTCCCATTTTGCAAAACCTGCTGCTATTGTCAAAGCTAACCTTGAGAACATTGGCTTGGCATCAAGATCAGGAAGTGTCGGAATAAAGATAAAAAGTGCTGATGAATCAACAAAAGTTGAATTAAGTCGTGGAGAGCGTCCAAAGAAACCAGCCATACACAATCAAGATCAGGATGTTACTGTTTCTACAAAGGGTGACCCTTCTTGCAACGACGTGTCCAAGGTTGATCAAAATCAAACTTCAAATATAGTTGTTGGTGAAAGTGGGAATAAAGGACACGAAGCTGTTGAAAAAGGAGTGGAGCCAGCTGTGGTATCTTCCTCTGTTTGCTCTGGCAATGGTGCAGAGAGGGGTTCGGAGGATCCAAATCAAAATTTGAAGCGAAAAAGTATAGACACTGAGGACTCTGAGAGCCAAAGTGAAGATGTTGAGGAAGAATCAGTTGGTGTCAAAAAGGAAGTTCATGCACGAGGATTTGGAGCCACGAGAGGCCGTTCAGCAGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCGTTACAAGAACTCATACCAAATTGCAATAAGGCGGATAAAGCTTCAATGTTGGATGAGGCGATAGAGTATCTCGAAACACTTCAACTCCAGCTTCAAATTATGTCAATGGGAAGTGGTTTATATGTGCCTGCAATGATGTTACCTCCGGGAATGCAACACATGCATGCACCACATATGGGTCCTTTTTCACCTATAGGTGTTGGGATGCAAATGAGGTTAGGAATGGGCATGCTTGATGCTAATGTTATTGAGTCCTCTAGATTTATTCAAGTGCCCCAAAAGCAAGGAACTCAACTTCCCATTACACATACACCTGGATCCTCTGTTTTACATGGGATGGCAAGACCAAATGCTCAAGTGTTTGGGCATCATCCTAGTCAGGTTCACCCCATGCCAATGCCACATGCTCCCATCTTTTCTTTTCCAGGAGAACCTTTTATCAACTCATCATCAACTTTAGGACTGATGGAAACTGTGGATAAGGCTTCTTCAGCCTTTGGCTTAAAGGATCAGATTCCACAACTTGTACAAAACACCAACAACGGTTGTAATTCAACAAATCAGATGTCAACACAGTGTGAAGCAACCATTGGTGGATTTGAACACTCAACTTTGGTACTTAATAGTGGTCATGCCACTTCGGCAAATGACAGAGGAGCTAGTAATCCCAGTAAAGAAGATAAACACTTGTGA 1929 0.4152 MPLHELYRVAKGKLDDPIEMNNNTTCAVDQSSVPNNDLFELIWEKGQISVQGQSSRARVSPNCKTLPSHTPIGYANNAITTNTRMGKCGNLGAELNEIRRLVPSGEVDLSEEEEDMVMPWFSYGRDDDSLQHGYSTDFFHEPSGVMNELSASNNFSLLDRRNNCSKIFRDTHKHSPFASVRSRVADIAENNANNVPSGSSGFSSLKMEKQGPVMCSNNSSTMMNFSHFAKPAAIVKANLENIGLASRSGSVGIKIKSADESTKVELSRGERPKKPAIHNQDQDVTVSTKGDPSCNDVSKVDQNQTSNIVVGESGNKGHEAVEKGVEPAVVSSSVCSGNGAERGSEDPNQNLKRKSIDTEDSESQSEDVEEESVGVKKEVHARGFGATRGRSAEVHNLSERRRRDRINEKMRALQELIPNCNKADKASMLDEAIEYLETLQLQLQIMSMGSGLYVPAMMLPPGMQHMHAPHMGPFSPIGVGMQMRLGMGMLDANVIESSRFIQVPQKQGTQLPITHTPGSSVLHGMARPNAQVFGHHPSQVHPMPMPHAPIFSFPGEPFINSSSTLGLMETVDKASSAFGLKDQIPQLVQNTNNGCNSTNQMSTQCEATIGGFEHSTLVLNSGHATSANDRGASNPSKEDKHL 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02098 642 CDD bHLH_AtPIF_like 390 452 - -
Gma03g02098 642 PANTHER TRANSCRIPTION FACTOR PIF3 1 602 IPR044273 GO:0003700|GO:0006355
Gma03g02098 642 MobiDBLite consensus disorder prediction 258 390 - -
Gma03g02098 642 Pfam Helix-loop-helix DNA-binding domain 394 440 IPR011598 GO:0046983
Gma03g02098 642 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 390 439 IPR011598 GO:0046983
Gma03g02098 642 MobiDBLite consensus disorder prediction 331 345 - -
Gma03g02098 642 SMART finulus 396 445 IPR011598 GO:0046983
Gma03g02098 642 MobiDBLite consensus disorder prediction 280 312 - -
Gma03g02098 642 Gene3D - 387 447 IPR036638 GO:0046983
Gma03g02098 642 MobiDBLite consensus disorder prediction 258 278 - -
Gma03g02098 642 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 388 449 IPR036638 GO:0046983
Gma03g02098 642 PANTHER TRANSCRIPTION FACTOR PIF3 1 602 - -
Gma03g02098 642 MobiDBLite consensus disorder prediction 369 384 - -
Gma03g02098 642 MobiDBLite consensus disorder prediction 346 361 - -
Gma03g02098 642 MobiDBLite consensus disorder prediction 623 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02098 Gma-Chr3 46527695 46532687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02098 1 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.888 3.57e-67 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g02098 HLH 4.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02098 K12126 - gmx:102659557 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02098 03 46527695 46532687 Gma03g02098 03 46527695 46532687 ECH