Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02097 ATGGGGAGACACTCTTGCTGCTACAAGCAGAAGCTTCGTAAAGGCCTCTGGTCTCCGGAGGAAGACGAGAAGCTTTTGAATTACATCACCAAACATGGCCATGGATGTTGGAGCTCCGTTCCAAAACTAGCTGGTCTTCAGaggtgtggcaagagctgcagattaaggtggataaattatctcaggcctgatttgaagagaggagcattctcacagcaagaagagaattccattgttgaacttcatgcagtccttggcaacaGGTGGTCACAGATTGCAGCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAATCTATGGAATTCCTGTCTGAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACACACCAACCCCTCTCTGAGATTGAGAATGACAAGGACAAGCCTCTCACAGCTGACAAAAGCAACCAGAAAGCCTCCAATGAGGTGATGAGTCTTGTTGAGCCACCAAAACCAAAGCCAATAGCTACTACTGCAACTACTTCTATGCCTATGGATAGACATCCCCTTGAAGTTTCTTCCACCTCCAAGATCAGCAGCGGCAACAACAACAGCACCCTAGACAGGTTTGACAGCTCCATCACTAGTTCTGATATGATGGGAATGGGATATTTTCCTTTCCAGCACCTCAACTATGGACCAAACATGGGACTCACTACTACTCCCAACAACACCCCACTTTGCTTCATACCAAGTTCCACTTCTTCTCAAATGATGTCAGAGCTGAATTCCACCATGTTCCATTCTATGTTTCCAACACATGTAAAACCCACTGTTAGTCTTCACTCTAACAACAACAACAACCCTTCTTCAATATCCTCTGATGGTGTTCAGAACTGGGAAGTAGgtaccatcagtaacaacaacaacaacaacaatgcaagcaaaagcaatgggagcagtagctgcagcatccaattacaaagcagcagcacaataacatgggggctgcagcaagcagaatctgccaccaaGGCAGAACAAGAAGACATTAAATGGTCTGAATATCTCAACAACACCCCTTTCTATCTGGGAACCACGCCAGTGCAGCATCAAACCACAAACTCTCTCTACAGTAGTGATGAGGTCAAGCCAGAAACAACAGGCTTCATAGCAGACGAATCAAGTACCATGAGTTGGCACCACAGCCAGCATAATTTTCAACCTTCGGAGATATATACCAAAGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACCCTGTAG 1257 0.362 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLSEIENDKDKPLTADKSNQKASNEVMSLVEPPKPKPIATTATTSMPMDRHPLEVSSTSKISSGNNNSTLDRFDSSITSSDMMGMGYFPFQHLNYGPNMGLTTTPNNTPLCFIPSSTSSQMMSELNSTMFHSMFPTHVKPTVSLHSNNNNNPSSISSDGVQNWEVGTISNNNNNNNASKSNGSSSCSIQLQSSSTITWGLQQAESATKAEQEDIKWSEYLNNTPFYLGTTPVQHQTTNSLYSSDEVKPETTGFIADESSTMSWHHSQHNFQPSEIYTKDLQRFSVAFGQTL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02097 418 MobiDBLite consensus disorder prediction 129 143 - -
Gma03g02097 418 MobiDBLite consensus disorder prediction 165 194 - -
Gma03g02097 418 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma03g02097 418 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gma03g02097 418 MobiDBLite consensus disorder prediction 119 194 - -
Gma03g02097 418 CDD SANT 17 61 IPR001005 -
Gma03g02097 418 MobiDBLite consensus disorder prediction 293 313 - -
Gma03g02097 418 Gene3D - 68 150 - -
Gma03g02097 418 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma03g02097 418 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma03g02097 418 Gene3D - 11 67 - -
Gma03g02097 418 SMART sant 66 114 IPR001005 -
Gma03g02097 418 SMART sant 13 63 IPR001005 -
Gma03g02097 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gma03g02097 418 PANTHER MYB DOMAIN PROTEIN 55 1 411 - -
Gma03g02097 418 CDD SANT 69 109 IPR001005 -
Gma03g02097 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gma03g02097 418 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma03g02097 418 PANTHER HOMEODOMAIN-RELATED 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02097 Gma-Chr3 46514817 46516799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02097 1 418 MYB Transcription Factor Family AT1G09540 49.180 1.86e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma03g02097 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02097 K09422 - gmx:778182 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02133 19 50227174 50229231 Gma03g02097 03 46514817 46516799 ECH
Gma03g02097 03 46514817 46516799 Gma19g02133 19 50227174 50229231 ECH
Gma03g02097 03 46514817 46516799 Gma03g02097 03 46514817 46516799 ECH
Gma03g02097 03 46514817 46516799 Gma10g01407 10 41035250 41037351 ECH
Gma03g02097 03 46514817 46516799 Gma20g00898 20 35405082 35406665 ECH
Gma19g02133 19 50227174 50229231 Gma03g02097 03 46514817 46516799 GST
Gma03g02097 03 46514817 46516799 Gma10g01407 10 41035250 41037351 PCT
Gma03g02097 03 46514817 46516799 Gma20g00898 20 35405082 35406665 PCT
Gma10g01407 10 41035250 41037351 Gma03g02097 03 46514817 46516799 PCT
Gma20g00898 20 35405082 35406665 Gma03g02097 03 46514817 46516799 PCT