Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02093 ATGAAGATAGCCACATATGCTCTCAATTCAAGGCTTGGTTGTTTGAACATTGAAGAAACGCAAGGACTGGAGGCAGTGACAAATGAGATGGTAAGGTTAATTGAAACAGCAACAGTGCCAGTTTTGGCGGTTGATGTTAATGGGATGGTCAATGGATGGAACACCAAAATTGCTGAGTTGACAGGTCTTCCAAGTGATGAAGCTATGGGAAAGCATTTTCTCACACTTGTAGAGGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGCACATGGCATTGCAGGGTGAGGAAGAGGAAGAGAGAAATGTCCAATTTGAGATCAACACATATGATTTCAAGATTGATTCTGGTCCCGTCAGCTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAACATTGTGGGAGTTTGTTTTGTGGCACAAGGTATAACTGCTCAGAAAACAATGATGGAAAAATTCCCCCGAATTGAAGGTGACTACAAGGCAATTGTACAGAACCCAAACCCATTGATCCCTCCATTATTTAACACAGATGAATTTGGTTGGTGTTGTGAATGGAATTCAGCTATGGCAAAATTAACCGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGAGAGATTTTCGGGACCCAGATAGCTGGTTGTCGCCTAAGGAATCATGAAGCTGTTGTTAATTTTAGCATTGTACTTAATACAGCCATGGCTGGTTTGGAAACAGAGAAGGTTCCTATTGGTTTCTTTACTCGCGATGGAAAGCATGTAGAATGTCTTCTTTCTGTGACTAAGAAATTGGATGCAGAAGGTGCAGTCACTGGTGTCTTCTGCTTCTTGCAACTAGCTAGTCCAGAGCTGCAACAGGCATTACACATTCAGCTCCTATCTGAGCAAACTGCATTGAAAAGACTGAAAGATTTAAATTATTTGAAAAGGCAAATCCGGAATCCTTTATATGGGATTATGTTCTCCCGGAAATTGTTAGAGGGTACTGAATTGGGAGCTGAACAAAAACAATTTCTGCAAACGAGCACGCAGTGTCAACGCCAGCTTAGCAAAATTCTGGATAACTCAGATCTTGACAGCATCATTGATGGACCTGTTCTCGTCTACAGCAATGATGATTCATTTGCAACAAAATGA 1152 0.4123 MKIATYALNSRLGCLNIEETQGLEAVTNEMVRLIETATVPVLAVDVNGMVNGWNTKIAELTGLPSDEAMGKHFLTLVEDFSVDRVKKMLHMALQGEEEEERNVQFEINTYDFKIDSGPVSLVVNACASRDLQDNIVGVCFVAQGITAQKTMMEKFPRIEGDYKAIVQNPNPLIPPLFNTDEFGWCCEWNSAMAKLTGWKREEVMDKMLLGEIFGTQIAGCRLRNHEAVVNFSIVLNTAMAGLETEKVPIGFFTRDGKHVECLLSVTKKLDAEGAVTGVFCFLQLASPELQQALHIQLLSEQTALKRLKDLNYLKRQIRNPLYGIMFSRKLLEGTELGAEQKQFLQTSTQCQRQLSKILDNSDLDSIIDGPVLVYSNDDSFATK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02093 383 ProSiteProfiles PAS repeat profile. 161 213 IPR000014 -
Gma03g02093 383 PANTHER TWO-COMPONENT HISTIDINE KINASE 9 374 - -
Gma03g02093 383 CDD HisKA 316 360 IPR003661 GO:0000155|GO:0007165
Gma03g02093 383 CDD PAS 37 145 IPR000014 -
Gma03g02093 383 PANTHER PHYTOCHROME A 9 374 - -
Gma03g02093 383 Gene3D PAS domain 175 286 - -
Gma03g02093 383 TIGRFAM sensory_box: PAS domain S-box protein 33 154 IPR000014 -
Gma03g02093 383 Pfam PAS fold 161 283 IPR013767 GO:0006355
Gma03g02093 383 Pfam PAS fold 29 143 IPR013767 GO:0006355
Gma03g02093 383 SMART pas_2 160 230 IPR000014 -
Gma03g02093 383 SMART pas_2 28 94 IPR000014 -
Gma03g02093 383 SUPERFAMILY PYP-like sensor domain (PAS domain) 31 141 IPR035965 -
Gma03g02093 383 ProSiteProfiles PAS repeat profile. 26 96 IPR000014 -
Gma03g02093 383 SUPERFAMILY PYP-like sensor domain (PAS domain) 176 281 IPR035965 -
Gma03g02093 383 PRINTS Phytochrome signature 29 45 IPR001294 GO:0006355|GO:0009584
Gma03g02093 383 PRINTS Phytochrome signature 143 163 IPR001294 GO:0006355|GO:0009584
Gma03g02093 383 PRINTS Phytochrome signature 123 140 IPR001294 GO:0006355|GO:0009584
Gma03g02093 383 PRINTS Phytochrome signature 48 63 IPR001294 GO:0006355|GO:0009584
Gma03g02093 383 SMART HisKA_10 306 370 IPR003661 GO:0000155|GO:0007165
Gma03g02093 383 Gene3D PAS domain 18 157 - -
Gma03g02093 383 CDD PAS 179 283 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02093 Gma-Chr3 46469949 46472130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02093 3 369 Histidine Kinase Gene Family AT1G09570 70.845 0.0 539
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02093 K12120 - gmx:100791098 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02129 19 50181682 50188016 Gma03g02093 03 46469949 46472130 GST
Gma03g02093 03 46469949 46472130 Gma10g01400 10 40856643 40861306 PCT
Gma03g02093 03 46469949 46472130 Gma20g00891 20 35284548 35290193 PCT
Gma10g01400 10 40856643 40861306 Gma03g02093 03 46469949 46472130 PCT
Gma20g00891 20 35284548 35290193 Gma03g02093 03 46469949 46472130 PCT