Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02092 ATGCTTGTGGTTTCAAGTGCAGTTGAAGTGACAATGTCCTCCTCAAGGCTTGGCCAATCATCCAGCAACAATTCTGGCAGATCTAGATCATCAAGACCCAGTGCTAGGAGGATATCTCAGACAAGTTTAGATGCAAAACCGCATGTAACATTTGAGGAATCAGGTAGTTCTTTTGACTACTCGAATTCAGTGAAAATGTCTCAAGCTGGTACAGGAGGAGGCACTGTCAGTGGAGAGCATGAACCAAAGTCTGATAGAGCAGCAACAACTGCTTACCTCCATCAGATGCAGAAAGGCAAGCTTATTCAGCCATTTGGGTGCTTGTTGGTTTTAGATGAGAAAACATATAAGGTCATCGCTTACAGTGAGAATGCACCTGAAATGCTCACCATGGTTAGTCATGCTGTCCCCAGTGTTGATGACCACCCTGCTCTTGACATTGGCACTGACATAAGGACTATTTTCACTGCCCCAAGTATTGCTTCTATTCACAAGGTACTTGGATTTGGGGATGTTTCACTTCATAACACCATTCTAGTCCATTGCAAGACCTTTGGGAATCCCTTTTACGCAATTATCCATCGTGTTACCGGTAGCACAATCATCGATTTTGAGCCGGTCCAGCCTCGTGAAGTTCCCATGACTGCATCCGGTTCCCTGCAATCCTACAAGCTTGCAGCAAAAGCAACAACTAGATTGCAATCCTTGGCTACTGTGAACATGGAAACACTATGTAACACAATGGTTCAAGAGGTTTTTGAGCTCACAGGTTATGACAGAGTGATGGCTTATAAATTCCATGACGATGATCATGGGGAAGTGATTGCTGAGGTGAAAAGGCCAGGCCTAGAGCCATATCTGGGGTTGCTCTACCCAGCCACTGATATTCCCCATGCGATGCGCTTTTTTCTTTATGGAGAACAAGCTTTGTATGGATCAACCTTGAGGGCTGCTCATAGTTGCCACTTGCAATTCATGGTGAACATGAATTCTAGTGCTTCCTTGGTATTGGCAGTTGTGATCGATGACAATGATGAAGATGGGAATAGTTCTGATGATGCTGCTGTTCAGCAGCCACACAAGAGTAGTACGAGTCTCTGGGGTTTAGTAGTTTGCCATCACACTACTCCCAGGTATGCTTGTCAATTTCTGGCTCAAGTATTTGTCATCCACGTGGGCAAAGAGCTAGAGATGTATCAGATTGTTGAGAAGAACATCCTGCGAACTCAAACACACTTGTTTGATATGCTGACGCGAGATGAGCCCCTAGCCATTGTTTCACAGAGTCCTAATATGATGAATCTTGTCAAGTGTGATGGAGCGACCCTGTTGTATAAAAACAAGGTGTGGAGATTAGGGGTAACGCCAAGTGAATCTCAGATAAGAGAGATAGCTTTGTGGCTCTCTCAGTGCCATAGGGATTCCACAGGTTTTTGTACAAATAGCTTGTCTGATGCAGGCTTCCCTGGGGCTGCTGCTCTTGGTGATATTGCATGTGGAATGACATCTGCCAGAATAACTTCCAAAGATATAGTTTTCTGGTTTCGGTCTCACACGGCCGCAGAAATCCGATGCGATGGTGCAAAGCATGAACCTGGTGAAAGGGATGATGGTAGGAGGATGCATCCAAGATCCATCATTCAAGGCTTTCCTTGA 1656 0.4511 MLVVSSAVEVTMSSSRLGQSSSNNSGRSRSSRPSARRISQTSLDAKPHVTFEESGSSFDYSNSVKMSQAGTGGGTVSGEHEPKSDRAATTAYLHQMQKGKLIQPFGCLLVLDEKTYKVIAYSENAPEMLTMVSHAVPSVDDHPALDIGTDIRTIFTAPSIASIHKVLGFGDVSLHNTILVHCKTFGNPFYAIIHRVTGSTIIDFEPVQPREVPMTASGSLQSYKLAAKATTRLQSLATVNMETLCNTMVQEVFELTGYDRVMAYKFHDDDHGEVIAEVKRPGLEPYLGLLYPATDIPHAMRFFLYGEQALYGSTLRAAHSCHLQFMVNMNSSASLVLAVVIDDNDEDGNSSDDAAVQQPHKSSTSLWGLVVCHHTTPRYACQFLAQVFVIHVGKELEMYQIVEKNILRTQTHLFDMLTRDEPLAIVSQSPNMMNLVKCDGATLLYKNKVWRLGVTPSESQIREIALWLSQCHRDSTGFCTNSLSDAGFPGAAALGDIACGMTSARITSKDIVFWFRSHTAAEIRCDGAKHEPGERDDGRRMHPRSIIQGFP 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02092 551 PANTHER PHYTOCHROME A 12 550 - -
Gma03g02092 551 Pfam GAF domain 240 396 IPR003018 GO:0005515
Gma03g02092 551 Gene3D - 219 401 IPR029016 -
Gma03g02092 551 MobiDBLite consensus disorder prediction 527 551 - -
Gma03g02092 551 SUPERFAMILY PYP-like sensor domain (PAS domain) 97 208 IPR035965 -
Gma03g02092 551 SUPERFAMILY GAF domain-like 220 392 - -
Gma03g02092 551 Pfam PAS fold 91 207 IPR013654 GO:0006355
Gma03g02092 551 SUPERFAMILY GAF domain-like 403 545 - -
Gma03g02092 551 MobiDBLite consensus disorder prediction 54 74 - -
Gma03g02092 551 MobiDBLite consensus disorder prediction 12 85 - -
Gma03g02092 551 PRINTS Phytochrome signature 510 529 IPR001294 GO:0006355|GO:0009584
Gma03g02092 551 PRINTS Phytochrome signature 155 177 IPR001294 GO:0006355|GO:0009584
Gma03g02092 551 PRINTS Phytochrome signature 255 274 IPR001294 GO:0006355|GO:0009584
Gma03g02092 551 PRINTS Phytochrome signature 425 445 IPR001294 GO:0006355|GO:0009584
Gma03g02092 551 SMART gaf_1 240 406 IPR003018 GO:0005515
Gma03g02092 551 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 240 399 IPR016132 -
Gma03g02092 551 PANTHER TWO-COMPONENT HISTIDINE KINASE 12 550 - -
Gma03g02092 551 MobiDBLite consensus disorder prediction 12 47 - -
Gma03g02092 551 MobiDBLite consensus disorder prediction 527 543 - -
Gma03g02092 551 Pfam Phytochrome region 408 545 IPR013515 GO:0006355|GO:0009584
Gma03g02092 551 Gene3D - 404 536 IPR043150 -
Gma03g02092 551 Gene3D PAS domain 89 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02092 Gma-Chr3 46467853 46469848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02092 12 550 Histidine Kinase Gene Family AT1G09570 64.273 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02092 K12120 - gmx:100791098 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02092 03 46467853 46469848 Gma03g02092 03 46467853 46469848 ECH