Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02087 ATGGCTTCTATCATAGGCGTTTCCTCCATTTACCAAACACCTTCTCTCGAACTATACCAGAGGCCAAATACTGCTGCCTCCACTTCCTCCGTTAGGTTGCAATGTTTAGACTCCAAGTCTCACTTCAACAACGTCCTCCGAGCCCACCAACGCCACTCCACTGGGCCGGGCCTCAAGCCCACACCGACTACTTTCGTCCCCTCCGCCGTCGCCACGCCCAATTCCTCCCTCCTCAGCGAAGAAGCCTTCAAAGGACTTGGCCGCGACTTCGACGAATTCGACCACGCCTCCGATTCCGACTCCGCCGCCGAATCCGTTCACCCCGACGAGCTTGACATTTCCAAGCTCGACTTGCCCTCGCGCCTCGTCGAGTCTCTCCAGAGCCGTGGAATTACTCAACTTTTCCCCATTCAGAGAGCGGTGTTAGTACCTGCACTAGAAGGTAGAGATATCATTGCGCGAGCCAAGACCGGTACCGGAAAGACGTTAGCGTTCGGAATTCCTATTATTAAAGGCCTCACTGAAGATGAACACGCACCTTCTCACAGGAGGTCTGGTAGGCTTCCGAGATTTTTGGTGCTTGCGCCTACGAGAGAGTTGGCGAAGCAAGTGGAGAAGGAGATAAAGGAATCTGCGCCTTACCTGAGCACTGTTTGTGTTTACGGTGGTGTTTCTTATGTTACTCAGCAGGGTGCGCTTTCGCGTGGTGTTGACGTGGTGGTTGGGACACCAGGGAGAATAATTGACTTGATAAACGGGAACAGCCTTAAGCTCAGTGAGGTTCAGTATTTGGTTCTCGATGAAGCGGACCAGATGCTTGCTGTTGGGTTTGAGGAAGACGTGGAAATGATTCTAGAGAATCTTCCAGCTCAAAGGCAGAGCATGCTTTTCTCTGCTACCATGCCCAGTTGGGTGAAGAAGTTGGCGAGAAAATATTTGAACAATCCACTCACAATTGATTTGGTTGGTGATGAAGAGGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATAGCAGCCACTGCCACTTCAAAGCGGACAATTCTTTCTGATCTTGTAACTGTTTACGCAAAGGGTGGGAAGACTATAGTTTTTACACAGACAAAAAGAGATGCTGATGAAGTATCATTGTCATTAACAAATAGTATAATGTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACACTGAATGGTTTCCGTCAAGGAAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTGGATATTCCCAATGTTGATTTGATTATCCATTATGAGCTTCCCAATGATCCTGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCTGGAAAACAAGGTAATGCCATTCTGCTGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTCGAACGTGATGTCGGATGCAAGTTTGAATTTGTTAGTGCACCGGCTATGGAAGAGGTTTTGGAGTCATCTGCTGAGCAGGTTGTTGCCACACTTGGTGGAGTTCATCCTGAGTCTGTTCAGTTTTTCACCCCAACTGCACAGAGACTGATCGAAGAACAAGGAACAAGTGCCCTTGCAGCTGCACTCGCACAACTGAGTGGATTTTCCCGACCACCATCATCCCGGTCTCTTATCACCCATGAACAGGGATGGATTACATTGCAACTAACTCGAGATTCAGATAGTAGAAGATATTTTTCAGCAAGATCAATCACTGGGTTTCTTTCTGATGTTTATCCTGCAGCTGCTGATGAAGTTGGAAAAATCCATTTAATTGCAGATGAAAAGGTTCAAGGAGCTGTTTTTGATCTTCCTGAGGAGATTGCTAAAGAATTACTTAATAGGGACATACCACCTGGAAACACCGTTTCCAAGATCACCAAGCTACCTTCTTTGCAAGATGATGGGCCTCCAAGTGATTTCTATGGGAGGTTCTCTGACAGAGATAGAAGTAGCCGAAgaggttctacttctaggggaggttccgcttctagggACCGGAGAGGTTTTAAATCCTCACGGGGCTGGGATGTGGAAGACTCCGGTGATGACTTTGGTGATCAATCCAGTAGGAGAGGTGGTAGAAATTTTAAAACTGGCAACAGCTGGTCTCGAGCAGCAGGTAAAAGCAGTGGCGATGATTGGCTAATTGGAGGTGGTAGACGATCAAGCAGGCCTTCATCATCAGACAGATTTGGAgggacctgttttaattgcggggaatctgggcatcgtgcatcagattgtccaaacTCTCAGGAACACGGTGCGTTAGTAAAAAGTGAAAAAGAAATGGCAGAACTGAGTTTGGGAATTCTAATTGATATTGTTGATGAGGAATGGATGAGAGACACTCTTCCTGATGATGATCTTCCACTGCCCCCAACACTGGTTGTTAGGACAGATGATACTGAGGACTCAAATCAGGAGATTCAACAAGTTAATGTGGATGCTTGGCACGATCTTGCCTTTGGTCAAGAATAG 2502 0.4536 MASIIGVSSIYQTPSLELYQRPNTAASTSSVRLQCLDSKSHFNNVLRAHQRHSTGPGLKPTPTTFVPSAVATPNSSLLSEEAFKGLGRDFDEFDHASDSDSAAESVHPDELDISKLDLPSRLVESLQSRGITQLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGLTEDEHAPSHRRSGRLPRFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYVTQQGALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADQMLAVGFEEDVEMILENLPAQRQSMLFSATMPSWVKKLARKYLNNPLTIDLVGDEEEKLAEGIKLYAIAATATSKRTILSDLVTVYAKGGKTIVFTQTKRDADEVSLSLTNSIMSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKQGNAILLYTSSQRRTVRSLERDVGCKFEFVSAPAMEEVLESSAEQVVATLGGVHPESVQFFTPTAQRLIEEQGTSALAAALAQLSGFSRPPSSRSLITHEQGWITLQLTRDSDSRRYFSARSITGFLSDVYPAAADEVGKIHLIADEKVQGAVFDLPEEIAKELLNRDIPPGNTVSKITKLPSLQDDGPPSDFYGRFSDRDRSSRRGSTSRGGSASRDRRGFKSSRGWDVEDSGDDFGDQSSRRGGRNFKTGNSWSRAAGKSSGDDWLIGGGRRSSRPSSSDRFGGTCFNCGESGHRASDCPNSQEHGALVKSEKEMAELSLGILIDIVDEEWMRDTLPDDDLPLPPTLVVRTDDTEDSNQEIQQVNVDAWHDLAFGQE 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02087 833 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 493 IPR001650 -
Gma03g02087 833 Pfam Zinc knuckle 740 757 IPR001878 GO:0003676|GO:0008270
Gma03g02087 833 Gene3D - 714 764 - -
Gma03g02087 833 MobiDBLite consensus disorder prediction 622 738 - -
Gma03g02087 833 Gene3D - 112 323 IPR027417 -
Gma03g02087 833 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 61 754 - -
Gma03g02087 833 SMART helicmild6 373 453 IPR001650 -
Gma03g02087 833 CDD SF2_C_DEAD 333 462 - -
Gma03g02087 833 MobiDBLite consensus disorder prediction 647 697 - -
Gma03g02087 833 SMART ultradead3 130 336 IPR014001 -
Gma03g02087 833 ProSiteProfiles Zinc finger CCHC-type profile. 742 757 IPR001878 GO:0003676|GO:0008270
Gma03g02087 833 Pfam GUCT (NUC152) domain 540 639 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gma03g02087 833 Pfam Helicase conserved C-terminal domain 346 453 IPR001650 -
Gma03g02087 833 CDD GUCT_Hera 547 626 - -
Gma03g02087 833 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 319 IPR014001 -
Gma03g02087 833 SMART c2hcfinal6 741 757 IPR001878 GO:0003676|GO:0008270
Gma03g02087 833 CDD DEADc 122 320 - -
Gma03g02087 833 SUPERFAMILY Retrovirus zinc finger-like domains 725 761 IPR036875 GO:0003676|GO:0008270
Gma03g02087 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 474 IPR027417 -
Gma03g02087 833 MobiDBLite consensus disorder prediction 698 714 - -
Gma03g02087 833 Pfam DEAD/DEAH box helicase 135 308 IPR011545 GO:0003676|GO:0005524
Gma03g02087 833 PANTHER - 61 754 - -
Gma03g02087 833 Gene3D - 337 526 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02087 Gma-Chr3 46423655 46431481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02087 57 475 Eukaryotic Initiation Factors Gene Family AT1G72730 35.280 5.40e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02087 - - gmx:100779706 1391.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02125 19 50142014 50147585 Gma03g02087 03 46423655 46431481 ECH
Gma03g02087 03 46423655 46431481 Gma03g02087 03 46423655 46431481 ECH
Gma19g02125 19 50142014 50147585 Gma03g02087 03 46423655 46431481 GST
Gma03g02087 03 46423655 46431481 Gma10g01396 10 40789312 40795635 PCT
Gma03g02087 03 46423655 46431481 Gma20g00887 20 35200650 35206046 PCT
Gma10g01396 10 40789312 40795635 Gma03g02087 03 46423655 46431481 PCT
Gma20g00887 20 35200650 35206046 Gma03g02087 03 46423655 46431481 PCT