Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02078 ATGGCGTCTTCATTATCTGCTCAATTGGTTCAATGTCAGAATTCACTTCCACCTCTTCAGGCTAACTTTAGCCAAGATGTGTCTAAGGTTCAAAGGTCACATGTGGTATGTTGCGGTACCAAATCACCGATTGGTTATGGTAAAACATTGACATCAAGATCACATAATGCCCTGAGGTTTTCTGTCACGCAACAATCTGAAGCAAGGTCAATTCGATATAGGAGAATGACATGTGTCAATGCTGCAGATAGTTGTTTTTTTTATGTAGAAGTTGGTGGTGAACCTGTGGGCAGGATTGTTTTGGGCCTATTTGGAGAGGTTGTTCCTAAAACAGTTCAAAATTTCAGTGCTTTGTATACAGATGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCATCGTATAATCAAAGATTTCATGATTCAGGGTGGAGACTTTACAGAAGGAAATTTTCAACACTTTCTTGCTGTGAAGCATGTCGGTCCTGGAATTCTGAGCATGGCGAATGCTGGTCCTAATAATAATGGTAGTCAATTTTTCATTTTCACTGTAAAGACTCTATGGCTAGACAATTGGCACGTTGTATTTGGACATATCATTGATGGAATGGATGTTGTGAAGACACTTGAATCCCAGGAGACGAGTAGGTCAGATGTCCCTCGGAAACCTTGCAGAATTGTTAATTGCGGAGAACTGCCTATAGAGGGTTGA 711 0.4065 MASSLSAQLVQCQNSLPPLQANFSQDVSKVQRSHVVCCGTKSPIGYGKTLTSRSHNALRFSVTQQSEARSIRYRRMTCVNAADSCFFYVEVGGEPVGRIVLGLFGEVVPKTVQNFSALYTDEKGYGYKGSSFHRIIKDFMIQGGDFTEGNFQHFLAVKHVGPGILSMANAGPNNNGSQFFIFTVKTLWLDNWHVVFGHIIDGMDVVKTLESQETSRSDVPRKPCRIVNCGELPIEG 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02078 236 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 127 144 IPR020892 GO:0003755|GO:0006457
Gma03g02078 236 SUPERFAMILY Cyclophilin-like 82 232 IPR029000 -
Gma03g02078 236 Gene3D - 72 235 IPR029000 -
Gma03g02078 236 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 52 235 - -
Gma03g02078 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Gma03g02078 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 191 206 IPR002130 GO:0000413|GO:0003755
Gma03g02078 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 163 178 IPR002130 GO:0000413|GO:0003755
Gma03g02078 236 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 178 190 IPR002130 GO:0000413|GO:0003755
Gma03g02078 236 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 52 235 - -
Gma03g02078 236 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 89 230 IPR002130 GO:0000413|GO:0003755
Gma03g02078 236 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 86 231 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02078 Gma-Chr3 46338128 46340938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02078 97 229 U-box Gene Family AT5G67530 34.228 1.43e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02078 K03768 - gmx:100785805 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02115 19 50040736 50042934 Gma03g02078 03 46338128 46340938 GST