Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02076 ATGAAGGTGATTCTATTACTCATAGCAGCATCATTTTCCTTTGTTTCTGTACTTAGATCTGAGGCTGAGCATTTGTTCCAAAACGATGCCGTTTCACTGGCAGTGGAAGTACCGCCCGGACCTCCACCTCTCATGGTCCCCCTCACTCTCATTCAgggagctgcttccaaaggagccgTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGATCTGGGGCAAATAGTTGGCTCATTCAATTGGAGGGAGGAGGATGGTGTAATACCATCAGTAGTTGTGTCTTTAGAAAAACTACTCGTCGTGGTTCCTCAAAATACATGGAAAAGCAACTAGCATTCACAGGGTTGTTGAGCAATAAAGCTGAAGAAAACCCTGATTTCTTTAACTGGAACAGAGTTAAAGTACGGTACTGTGATGGGGCATCTTTCAGTGGAGATAGTCAAAACGAGGTTGCACAGCTTCAATTTCGAGGACAAAAAATATGGCAAGCTGCAATGCAGGAATTATTGTTCAAGGGAATGCAGAAGGCCAACCAGGCCCTTTTGTCTGGATGCTCTGCAGGTGGTCTGGCATCTATAATACATTGTGATGAGTTCCGGAGCTTGTTTCCTACATCTACCAAAGTGAAATGTTTGAGTGATGCCGGGTTTTTCCTAGATGCAGTTGATGTATCTGGGGGTCACACACTGAGGAATCTGTTTGGAGGTGTAGTTAAGTTACAGGAGGTGCAAAAAAATCTGCCAAATAGTTGTCTCAACCAACTGGACCCAACTTCGTGTTTTTTTCCTCAGAATTTGATCAACTATGTTGAGACTCCACTGTTTCTGCTCAATGCAGCTTATGATGCATGGCAGGTCCAAGAAAGTTTGGTCCCACATTCAGCAGATCCCCATGGCTCTTGGAATGATTGTAAAGCAAATCATGCACACTGTAACTCATCTCAAATTCAGTTCCTCCAAGacttcagaaatcaaatgctaaatgatgtgaaaggcttctctgagacatctcaaactgggttattcataaattcttgttttgctcattgccagtctgagagacaagatacatggtttgctgatgactctccactcattaacaacgtgCCAGTTGCAATTGCTGTTGGAGACTGGTTTTTGGATCGGAAAACTGTCAAAGCTATCGACTGTGCTTACCCCTGTGACAATACCTGCCATAATCTGGTCTTCAATGCTGGTAAATCTGCTGCGGTGGACTACCAGTCCACAAGTGATGATGGCATACCTACCAATACCATGACCATGATATATTCCCACTCCACGAGGCTGACTTTTAGTACTGGCCTATATATGCTACGTGTTTTATCGGCATTTACATGTTCCTAG 1380 0.3862 MKVILLLIAASFSFVSVLRSEAEHLFQNDAVSLAVEVPPGPPPLMVPLTLIQGAASKGAVCLDGTLPGYHFHPGFGSGANSWLIQLEGGGWCNTISSCVFRKTTRRGSSKYMEKQLAFTGLLSNKAEENPDFFNWNRVKVRYCDGASFSGDSQNEVAQLQFRGQKIWQAAMQELLFKGMQKANQALLSGCSAGGLASIIHCDEFRSLFPTSTKVKCLSDAGFFLDAVDVSGGHTLRNLFGGVVKLQEVQKNLPNSCLNQLDPTSCFFPQNLINYVETPLFLLNAAYDAWQVQESLVPHSADPHGSWNDCKANHAHCNSSQIQFLQDFRNQMLNDVKGFSETSQTGLFINSCFAHCQSERQDTWFADDSPLINNVPVAIAVGDWFLDRKTVKAIDCAYPCDNTCHNLVFNAGKSAAVDYQSTSDDGIPTNTMTMIYSHSTRLTFSTGLYMLRVLSAFTCS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02076 459 Pfam Pectinacetylesterase 44 389 IPR004963 GO:0016787
Gma03g02076 459 PANTHER NOTUM-RELATED 1 424 IPR004963 GO:0016787
Gma03g02076 459 PANTHER PECTIN ACETYLESTERASE 1 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02076 Gma-Chr3 46323178 46328825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02076 44 409 Carbohydrate Esterase AT2G46930 73.497 0.0 595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02113 19 50023255 50028834 Gma03g02076 03 46323178 46328825 GST
Gma03g02076 03 46323178 46328825 Gma10g01380 10 40646780 40656346 PCT
Gma03g02076 03 46323178 46328825 Gma02g00060 02 721467 725793 PCT
Gma10g01380 10 40646780 40656346 Gma03g02076 03 46323178 46328825 PCT
Gma02g00060 02 721467 725793 Gma03g02076 03 46323178 46328825 PCT