Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02072 ATGATTCAGAAGATGTTTGACCCCAGCCGTTCTGGTATGACAAGAAGCTCCTCCCATGTAGCCTCCATTTATGACAATGATTTCCTTGAGTTGGTGTGGGAAAACGGTGAGGTTGTTGTACGAGGAGGTTCATCAAACAGATCACGAAAGACAAACGAGGAAAGAATACATGAAGATGCCAGCATTAACAAAAGAACAAGGTTAAACCCATTATTATACTCACTTGAAGATCACTTTCCACCTCAAAGGGACTCTGACATGAGCACTTCACACCAAAGCAATGGCCAAGATTCGTGTGGTCAATCCTCCCAAAGCAAGCTTCATGAAGAATTTGCAAACTTACTTAAGCCCGTTAGCATAGGCAATAATCACTTACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACAGTAGATTCAACTCAAACACCACCAACACCAAAAGTGAACTTCTCCAACTTTTCAATACCTGCAGTGTTTCTCAAATCTACTACTCATCAGGGAAACAGTGCAACCCAGCAGACAAACAATCATTCATCTCCAGCAAGAATGGAGGAGATCATTGAAGCCCGCAAGGTTGAGCAATCAGTTAAAGAATCACATGGTTTTCAAAAGCAAACATCCTTAACTGTTGAAAGAAGCACAAAATTGCCAACCCCACCGGTTGATGAACACTCTGAAGCTGTTGGTCATAACTGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAACTACGTTGTGACCAAACCTCAACTTCAGAAGCACTTATTAGAGCCAAGGCAAAAGCTTATAATAATAATACTAACATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCGCTTGGAGCCTCCAACGACCCAAACCTTGGTCTCAGGAAACATGAGGACACTGAAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGATGGTAACAGAGTCAGGAGAATCAGGAACCCTGTGGTTCATAACTTATCTGAAAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTAGACGATGCCATCGACTATCTGAAGACCCTAAAGCTTCAGCTACAGGTAATTTTTCAAATAATGTCAATGGGAAATGGGTTATGGCCACTTATGATGCTACCAGCTGCAACCACGGCGCATCACATGAATCCTCAGCTAGGAATGGGATTCAGGCCACCACAACTACCTATTCCACCATCACTTTCTGCTATCACAGACAACAGACTTCAGATGTTTGGTTGTTTCCCAAACCAAATACCACCCATGCCAGCAATGCCTCATGCACCTTTCTTCCCTATCATTGCAAATTCTGCCACACAACCACACTTGGCTAACACCACCAACTTGGCAGAACATTTGGCTGCATCTCTACATGGAAATGCAACAAAGCTAGCGCCACCAAGTCAGGTTTCCTTTCAACAACACAGCTGCACTAGTACTCCTACACTATCTACCCCTTTCATTTTTCCACAAAAATAG 1566 0.4278 MIQKMFDPSRSGMTRSSSHVASIYDNDFLELVWENGEVVVRGGSSNRSRKTNEERIHEDASINKRTRLNPLLYSLEDHFPPQRDSDMSTSHQSNGQDSCGQSSQSKLHEEFANLLKPVSIGNNHLQQCLPSSPLKKQRTVDSTQTPPTPKVNFSNFSIPAVFLKSTTHQGNSATQQTNNHSSPARMEEIIEARKVEQSVKESHGFQKQTSLTVERSTKLPTPPVDEHSEAVGHNCGVLGIHRSQGQLRCDQTSTSEALIRAKAKAYNNNTNMCHEPLLASSSVCSLGASNDPNLGLRKHEDTETYLSDNDGEPEDMVKQDRDGNRVRRIRNPVVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQVIFQIMSMGNGLWPLMMLPAATTAHHMNPQLGMGFRPPQLPIPPSLSAITDNRLQMFGCFPNQIPPMPAMPHAPFFPIIANSATQPHLANTTNLAEHLAASLHGNATKLAPPSQVSFQQHSCTSTPTLSTPFIFPQK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02072 521 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 517 - -
Gma03g02072 521 Gene3D - 327 386 IPR036638 GO:0046983
Gma03g02072 521 MobiDBLite consensus disorder prediction 42 62 - -
Gma03g02072 521 MobiDBLite consensus disorder prediction 124 153 - -
Gma03g02072 521 SMART finulus 336 385 IPR011598 GO:0046983
Gma03g02072 521 Pfam Helix-loop-helix DNA-binding domain 334 379 IPR011598 GO:0046983
Gma03g02072 521 CDD bHLH_AtPIF_like 330 396 - -
Gma03g02072 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 390 IPR036638 GO:0046983
Gma03g02072 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 379 IPR011598 GO:0046983
Gma03g02072 521 MobiDBLite consensus disorder prediction 85 106 - -
Gma03g02072 521 MobiDBLite consensus disorder prediction 47 62 - -
Gma03g02072 521 MobiDBLite consensus disorder prediction 76 106 - -
Gma03g02072 521 PANTHER TRANSCRIPTION FACTOR PIF3 1 517 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02072 Gma-Chr3 46273314 46276188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02072 287 403 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 50.794 2.79e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g02072 HLH 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02072 K12126 - gmx:100804665 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02109 19 49959542 49961906 Gma03g02072 03 46273314 46276188 GST
Gma03g02072 03 46273314 46276188 Gma10g01376 10 40581017 40583491 PCT
Gma10g01376 10 40581017 40583491 Gma03g02072 03 46273314 46276188 PCT