Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02071 ATGGGCAAACCCGCTAGTTCTTCCTCTTCCTCTATTAGCAGCACTACCAACCGCCGCCTCCTCATTTCAACCGCATCTTCTCTCACTCAACAACTTCCTACTGATCTCAGGCTTGGACTCGGCATTTCTGCCACTCAACATGTTGCTTCTTCTATTTCAAGGGGCCAATGGCAACAACCACACCATCCTTTTGTGAACAATAATTATTCACAAGCTGCTGCTTCTGCTGAAGTGAATGATTGCAGCAACGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGGATTCCAATCGGAAGAAAGCTCAATATACTAGCTCATGGAGGCTACTATGAATTAGTCAGGACTCTTGAACACATGTTTGACACTACCATTCTTTGGGGAACAGAGATGAATGGGGTGCAACCAGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCGACGGTAAAGAGGTTGAAGATCACAAGGGTAGACACATTCGGGTGTTAG 543 0.4549 MGKPASSSSSSISSTTNRRLLISTASSLTQQLPTDLRLGLGISATQHVASSISRGQWQQPHHPFVNNNYSQAAASAEVNDCSNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02071 180 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 179 IPR003311 GO:0005634|GO:0006355
Gma03g02071 180 Gene3D - 81 179 - -
Gma03g02071 180 SUPERFAMILY CAD & PB1 domains 83 172 - -
Gma03g02071 180 PANTHER AUXIN-INDUCED PROTEIN 2 179 - -
Gma03g02071 180 ProSiteProfiles PB1 domain profile. 87 177 IPR000270 GO:0005515
Gma03g02071 180 Pfam AUX/IAA family 74 174 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02071 Gma-Chr3 46261199 46263109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02071 1 172 B3 DNA Binding Superfamily AT5G62000 27.011 1.10e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma03g02071 AUX_IAA 5.6e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02071 K14484 - gmx:100818376 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02108 19 49945528 49946436 Gma03g02071 03 46261199 46263109 GST
Gma03g02071 03 46261199 46263109 Gma10g01374 10 40547483 40548893 PCT
Gma03g02071 03 46261199 46263109 Gma02g00066 02 782150 783180 PCT
Gma10g01374 10 40547483 40548893 Gma03g02071 03 46261199 46263109 PCT
Gma02g00066 02 782150 783180 Gma03g02071 03 46261199 46263109 PCT