Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02058 ATGTCAGGAAAGATCATTATCTCGGCTGTTTCTCTCATCCTGGTGGTGGGTGTGGCAATCGGCGTGGTGGTCGCCGTGAACAAGAAGGGCGAGGATCCTGCAGTTGAATCCCACCAAAAATACGTAGGGGTCATATGCCAAAACACCGATGAGAAAAAGCTCTGCCATGACACCCTGAGCTCCGTGAAGGGCATGGACAGCGCTGACCCCAAGGCCTACATCGCCACCGCTGTGAAAGCCACCATGGACAGCGTGACCAGGGCCTTCAACATGAGCGACAGGCTCACCACAGAGTACGGTGGCAGCGATAACGGAACCAAGATGGCCCTTGACGACTGCAAGGACCTCTTGCAATCAGCCATCGAGAGCCTCCAGCTCAGCACTGACATGGTTCACAACAACAACGTCCAGGCCGTGCATAACCAACAGGCTGATTTCAAGAACTGGCTCAGCGCTGTCATCTCTTACCAACAGGCCTGCACGGAGGGTTTTGACGATGCCAAAGACGGTGAGAAGAAGATCAAGGAGCAGTTGCAGACCCAGACCTTGGACAATGTTCAGAAACTCACTGGCATCACCCTTGACATTGTGAGTTCTTTGTCCCACATCCTCGAGCAGTTCGGCTTAAAGTTTAATCTTAAACCCGCATCTCGTCGTCTTCTCAGCGAGGATGGGTTCCCCACTTGGTTCTCTGCTGGTGATCGCAAGCTCTTGGCTCGTGGATGGAGAGCACGTATCAAGCCCAATGTTGTGGTTGCCAAGGATGGCTCTGGTCAGTTCAATACCGTTGCTCAGGCTATTGCTTCATACCCTAAGAATAACCAGGGTAGGTACATTATCTACGTTAAGGCCGGTGTCTATGACGAGTACATCACCGTTCCCAAGACTGCAGTCAACATTCTCATGTACGGTGATGGCCCTGCTAAGACCATCATCACCGGTCGCAAGAACTACGTCGAAGGTGTCAAGACCATGCAAACTGCCACTTTCGCCAACACTGCCGAAGGCTTCATTGCCAAGGCAATGACATTCCAGAACACAGCCGGTGCTGAGGGCCACCAAGCCGTTGCATTCAGGAACCAAGGAGACAGATCAGCTCTGGTTGGTTGCCACATTTTGGGGTACCAAGACACCTTGTACGTCCAGACCAACAGGCAATTCTACCGCAACTGCGTGATCTCTGGCACAGTGGACTTCATCTTTGGCACCTCCCCAACCGTGATCCAGCACTCAGTGATCATCGTGAGGAAGCCCTTGGACAACCAGTTCAACACGATCACCGCCGACGGAACATCCATGAAGAACATGGATACAGGAATCGTGATCCAGGGTTGCAACATCATCCCAGAAGCCGAGCTCTTCCCTACAAGATTCCAGGTGAAGTCATACCTTGGAAGGCCATGGAAGCAATTCTCAAGGACAATTGTGATGGAATCCACCGTGGGTGACTTCCTTCACCCGGAAGGATGGTGCCCATGGGCCGGTGAACACTTCGAAGACACCCTGTACTATGCTGAATACAACAACGATGGACCTGGTGCCAACGTTAACGGAAGGATCAAGTGGAAGGGTTACCGCGGTCTCATTAGCCAGCAAGAAGCTGCTCAGTTCACCCCTGCCCAATTCCTCCAGGCTGGTTCCAACGGTGGAACTGACTGGTTGAAGGCTCTCCATGTTCCTCATGCACTTAACTTCATGAAAGCTTGA 1707 0.5237 MSGKIIISAVSLILVVGVAIGVVVAVNKKGEDPAVESHQKYVGVICQNTDEKKLCHDTLSSVKGMDSADPKAYIATAVKATMDSVTRAFNMSDRLTTEYGGSDNGTKMALDDCKDLLQSAIESLQLSTDMVHNNNVQAVHNQQADFKNWLSAVISYQQACTEGFDDAKDGEKKIKEQLQTQTLDNVQKLTGITLDIVSSLSHILEQFGLKFNLKPASRRLLSEDGFPTWFSAGDRKLLARGWRARIKPNVVVAKDGSGQFNTVAQAIASYPKNNQGRYIIYVKAGVYDEYITVPKTAVNILMYGDGPAKTIITGRKNYVEGVKTMQTATFANTAEGFIAKAMTFQNTAGAEGHQAVAFRNQGDRSALVGCHILGYQDTLYVQTNRQFYRNCVISGTVDFIFGTSPTVIQHSVIIVRKPLDNQFNTITADGTSMKNMDTGIVIQGCNIIPEAELFPTRFQVKSYLGRPWKQFSRTIVMESTVGDFLHPEGWCPWAGEHFEDTLYYAEYNNDGPGANVNGRIKWKGYRGLISQQEAAQFTPAQFLQAGSNGGTDWLKALHVPHALNFMKA 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02058 568 Pfam Pectinesterase 249 545 IPR000070 GO:0030599|GO:0042545
Gma03g02058 568 CDD PMEI-like_3 45 201 - -
Gma03g02058 568 ProSitePatterns Pectinesterase signature 1. 274 293 IPR018040 -
Gma03g02058 568 PANTHER PECTINESTERASE 3 564 - -
Gma03g02058 568 Pfam Plant invertase/pectin methylesterase inhibitor 45 196 IPR006501 GO:0004857
Gma03g02058 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 201 IPR035513 -
Gma03g02058 568 PANTHER PECTINESTERASE 3 564 - -
Gma03g02058 568 SUPERFAMILY Pectin lyase-like 246 556 IPR011050 -
Gma03g02058 568 Gene3D - 243 564 IPR012334 -
Gma03g02058 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 202 IPR035513 -
Gma03g02058 568 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Gma03g02058 568 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 199 IPR006501 GO:0004857
Gma03g02058 568 SMART PMEI_2 37 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02058 Gma-Chr3 46149285 46151073 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02058 1 560 Carbohydrate Esterase AT2G47030 40.932 2.57e-139 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02058 K01051 - gmx:100815015 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02058 03 46149285 46151073 Gma10g01360 10 40319190 40321641 PCT
Gma03g02058 03 46149285 46151073 Gma02g00079 02 865421 867342 PCT
Gma10g01361 10 40325706 40327479 Gma03g02058 03 46149285 46151073 PCT