Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02056 ATGGGTGGCCATGCAGCCACAACTTACTCGGCGGCCAAGATTTCGGTGTGGTGGGACATTGACAACTGTCGTGTTCCCAAAGGCCACAACGCCAATTCCATCGCTCAGAACATAACCTCCGCCCTCGTCGGCATCAACTACGCCGGCCCCCTCTCCATCTCCGCCTATGGTGACACCAACCGCATCCCTCCCCCCGTCCAACACGCCCTCTCCAGCACCGGCGTTTCCCTCAACCACATCCCCACCGGTGCGAATGATGCTAGCGACATGAAGATTCTTGTGGACATGCTGCTATGGGCCGTAGACAATCCCGCCCCCGCTAACTACTTGCTCATATCCGGCGACACCAACTTCTCCAACGCCCTTCACCAACTCAGTTTGCGAAAGTACAACATTCTCCTCGCCCACCCGCCGCACGTTTCTCCCTCCCTCGCCGCCGCCGCCAAAGTCGTCTGGCTCTGGACAACCCTCTCCGCCGGCGGCCCGCCCCTCTCCGACTCCACCTCCAACTCCTGTAAACCCCCCACTCCCGCCCCTCTCCTTCAACCTTTTCAATTCAAACCCAAACCTAAATACATTAGAAAAATTACCACAATAACCCCAATCGAGACCAAGAACAATGATGCAGAACCACTACCGCCACCACCACAACCGCTAAGAAAGTTCTTTATCGGAGCACCTCATGAATTCTTTACTAGTAAATGTAACGAACCCGTAAACCTAATCCCAACCCCGACTAGTTCTAAGGAGATTAATCAAATTTTAATTCCTCGTCGTGATTCACACCAAAAAAAGCTAAATGAAATTCCTCGTGTTATGAATGCTACTACTCATCAAGATAATTCTGAGTACAATGTGGAGAATCTAATTGATGTTATTATGAGAACCCTAAACTTGCTCAAGGTTGAAATGATTCTGCCCTCTGAAGCAAATATAACTGATTGCATTCGTTATGGGGACCCCAAGTATCAGACAATTGATGTCAGGATGGTCTTGGATGCTGCCATACAGCAAGGTAGGCTAGCCAAACGAGTCTGTGGGCCCATGCATTTGTATCTTGCTAGAAATGACACGCTCTGGAACTGTGTCAACCATATGGGTGGTCATCCTTGTGATTTTCCGCAAGAAACATGGGATAGAGTCAAGCAGTTCCTCACTTCATCATCTGGGAGATCGTTGATGTTGACATCTCGTTGCAGATTTGAAGCATCTGTGACTCTAAAGAAATCATGTCTTCGAGAGGTTGTATTAGGGGATGTGCTTAAAATTCTAGAGATGATGATCACAGTCAAGAAATGGATTATACATCATCATAGTGGGTGGCAGCCAATTACCATTAGGCTTAAGGAGAGTATATTTAGTAGCTCAGTTGACATAGCTAAATCATGA 1389 0.4824 MGGHAATTYSAAKISVWWDIDNCRVPKGHNANSIAQNITSALVGINYAGPLSISAYGDTNRIPPPVQHALSSTGVSLNHIPTGANDASDMKILVDMLLWAVDNPAPANYLLISGDTNFSNALHQLSLRKYNILLAHPPHVSPSLAAAAKVVWLWTTLSAGGPPLSDSTSNSCKPPTPAPLLQPFQFKPKPKYIRKITTITPIETKNNDAEPLPPPPQPLRKFFIGAPHEFFTSKCNEPVNLIPTPTSSKEINQILIPRRDSHQKKLNEIPRVMNATTHQDNSEYNVENLIDVIMRTLNLLKVEMILPSEANITDCIRYGDPKYQTIDVRMVLDAAIQQGRLAKRVCGPMHLYLARNDTLWNCVNHMGGHPCDFPQETWDRVKQFLTSSSGRSLMLTSRCRFEASVTLKKSCLREVVLGDVLKILEMMITVKKWIIHHHSGWQPITIRLKESIFSSSVDIAKS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02056 462 CDD PIN_limkain_b1_N_like 13 137 - -
Gma03g02056 462 PANTHER LIMKAIN B LKAP 236 440 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gma03g02056 462 PANTHER LIMKAIN B LKAP 5 171 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gma03g02056 462 Gene3D - 9 156 - -
Gma03g02056 462 Pfam OST-HTH Associated domain 397 451 IPR025677 -
Gma03g02056 462 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 236 440 - -
Gma03g02056 462 PANTHER ENDONUCLEASE OR GLYCOSYL HYDROLASE WITH C2H2-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED 5 171 - -
Gma03g02056 462 Pfam NYN domain 13 149 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02056 Gma-Chr3 46133631 46135334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02056 5 170 C2H2 Transcription Factor Family AT5G61190 66.867 1.48e-69 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02056 - K17573 gmx:100819329 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02056 03 46133631 46135334 Gma03g02056 03 46133631 46135334 ECH