Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02054 ATGCACGTTACTACGTTTATGGTTTTTGATCCGTGTCAGAGTATCAGATCTCCACCTTTGCGTAGAAAACTTGCTAGTTGCCACCACGTAGCCCATAATCAGCTTCACAGTGTGGAAGATCAAATACCATTTTTCAGAGCTTCAAACGCGGACGAAATGGGAACTCCATCTCGTCCTTTGCTGATTCCCACATCACAGCAAAGGAGTGATTTGGAGTTTGGAGCGACTGAACTAATCATTAATTTGCACTCGCTGTTTCAGCTTCATCACCCTTCTTTTGCATCATTTATATCTCTTGAGAAATGGCACAAGAAACCTTTCTATTCACATCTGAATCTCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTCGGAGAGATCACAACCAAGGCCAACGTAGACTATGAAAAGATTGTCCGCGACACATGCCGCGAAATTGGATTCATCTCTGATGATGTTGGTCTTGATGCTGACAAATGCAAGGTGTTGGTCAACATTGAGCAACAGAGCCCGGATATCGCCCAGGGTGTGCACGGCCACTTCACCAAGCGCCCAGAGGAGGTTGGTGCTGGTGACCAGGGTCACATGTTTGGGTATGCCACCGATGAAACCCCCGAGTACATGCCCCTCAGCCATGTCCTTGCAACCAAACTTGGTGCTCGCCTCACAGAGGTTAGGAAGAATGGCACCTGTGCTTGGTTGAGGCCAGATGGTAAGACACAAGTAACCGTCGAGTACTACAATGACAATGGTGCCATGGTTCCAGTTCGTGTCCACACTGTCCTAATTTCCACCCAACATGATGAGACTGTGAGCAATGATCAAattgctgcggaccttaaagagcatgttatcaagcctgtcattcctgagaagtaccttgatgagaagaccatcttccaccttaacccttctggccgttttgtcattggtggccctcatggtgatgctggtctcactggaagaaagatcatcattgatacctatggtggctggggtgctcatggtggaggtgccttttcagggaaggaccctaccaaggttgacagaagtggtgcctatattgtaaggcaggctgcaaagagtgtcgtggcaaatggccttgctagaagTCAAAAACTTGGACCGCTTTATACTACGCCCTCCTCCCTACTTATCCTGCGCATATTTCGCCGTTTTCTCGCCGAGATCTTCAACTACCTCTCCCGCATTCTCGCTTCCTCAACTGcACAACATTCCTATTCAATTCCAGAGGAAAGAATCATGAGTTGTTTCAGCTGTTGTGAAGAAGATGACTACCAGAAGGCTTCTGAAAGTGGAGGACAGCATGTAGTAAAAAACTCAACAGGAAATCATGGAAATGGTCGTGCATCCGAAACTGCAAAGCAGGGCACTCAAGCTGTGAAAATTCAGCCCATTGAAGTTCCTGAATTACCAGTGGATGAACTCAAAGAAATTACGGATGGCTTTGGAGAAAGTTCTTTGATTGGAGAGGGATCCTATGGAAGAGTATATTATGGTGTTCTGAAAAGTAGGCAGGCTGCGGCAATCAAGAAATTAGATGCCAGTAAACAGCCTGATGATGAATTTTTAGCCCAGGTTTCAATGGTTTCACGGCTGAAGCATGACAATTTTGTTCAATTGCTTGGTTATTGCATTGATGGAAACTCCCGAGTTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTACATGGTATAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTCTAACATGGACTCAGAGAGTTAAAATTGCTGTAGGGGCTGCCAAAGGGCTTGAGTACCTGCACGAGAGGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTACTAATCTTTGATGACGATGTTGCTAAAATTGCAGATTTTGATTTGTCAAATCAGGCTCCTGACATGGCAGCACGTCTCCATTCCACCCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGCCAATTGAATGCTAAGAGTGATGTATACAGCTTTGGTGTTGTCCTTCTAGAACTTTTGACTGGAAGGAAGCCTGTTGATCATACACTACCACGTGGGCAGCAGAGCCTGGTTACTTGGGCTACACCAAGACTCAGTGAGGATAAAGTCAGACAGTGTGTAGATGCAAGACTAGGAGGAGAGTACCTGCCCAAAGCTGTTGCTAAGATGGCCGCTGTTGCTGCCCTGTGCGTGCAATACGAAGCTGATTTCAGACCAAACATGAGCATCGTAGTTAAAGCTCTTCAACCTTTGTTGAACGCAAGACACGGGCCTGCTGGTGAAACTCCAAACTAA 2364 0.4031 MHVTTFMVFDPCQSIRSPPLRRKLASCHHVAHNQLHSVEDQIPFFRASNADEMGTPSRPLLIPTSQQRSDLEFGATELIINLHSLFQLHHPSFASFISLEKWHKKPFYSHLNLKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCREIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGLARSQKLGPLYTTPSSLLILRIFRRFLAEIFNYLSRILASSTAQHSYSIPEERIMSCFSCCEEDDYQKASESGGQHVVKNSTGNHGNGRASETAKQGTQAVKIQPIEVPELPVDELKEITDGFGESSLIGEGSYGRVYYGVLKSRQAAAIKKLDASKQPDDEFLAQVSMVSRLKHDNFVQLLGYCIDGNSRVLAYEFASNGSLHDILHGIKGVKGAQPGPVLTWTQRVKIAVGAAKGLEYLHERADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDARLGGEYLPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARHGPAGETPN 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02054 787 SUPERFAMILY Protein kinase-like (PK-like) 474 771 IPR011009 -
Gma03g02054 787 ProSitePatterns Protein kinases ATP-binding region signature. 501 524 IPR017441 GO:0005524
Gma03g02054 787 Pfam S-adenosylmethionine synthetase, central domain 193 313 IPR022629 GO:0004478|GO:0006556
Gma03g02054 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Gma03g02054 787 SUPERFAMILY S-adenosylmethionine synthetase 112 184 IPR022636 GO:0004478|GO:0006556
Gma03g02054 787 Pfam Protein tyrosine and serine/threonine kinase 500 771 IPR001245 GO:0004672|GO:0006468
Gma03g02054 787 SUPERFAMILY S-adenosylmethionine synthetase 315 379 IPR022636 GO:0004478|GO:0006556
Gma03g02054 787 MobiDBLite consensus disorder prediction 443 471 - -
Gma03g02054 787 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 427 785 - -
Gma03g02054 787 Gene3D - 337 387 - -
Gma03g02054 787 CDD S-AdoMet_synt 114 375 - -
Gma03g02054 787 Gene3D Transferase(Phosphotransferase) domain 1 570 781 - -
Gma03g02054 787 Gene3D Phosphorylase Kinase; domain 1 456 569 - -
Gma03g02054 787 ProSitePatterns S-adenosylmethionine synthase signature 2. 341 349 IPR022631 GO:0004478|GO:0006556
Gma03g02054 787 Gene3D - 103 187 - -
Gma03g02054 787 TIGRFAM metK: methionine adenosyltransferase 113 377 IPR002133 GO:0004478|GO:0005524|GO:0006556
Gma03g02054 787 SMART serkin_6 495 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02054 787 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 427 785 - -
Gma03g02054 787 MobiDBLite consensus disorder prediction 445 471 - -
Gma03g02054 787 Pfam S-adenosylmethionine synthetase, N-terminal domain 112 176 IPR022628 GO:0004478|GO:0006556
Gma03g02054 787 Gene3D - 194 315 - -
Gma03g02054 787 ProSiteProfiles Protein kinase domain profile. 495 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g02054 787 Pfam S-adenosylmethionine synthetase, C-terminal domain 315 377 IPR022630 GO:0004478|GO:0006556
Gma03g02054 787 ProSitePatterns S-adenosylmethionine synthase signature 1. 194 204 IPR022631 GO:0004478|GO:0006556
Gma03g02054 787 SUPERFAMILY S-adenosylmethionine synthetase 190 314 IPR022636 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02054 Gma-Chr3 46111228 46123354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02054 474 779 Receptor kinase-like Gene Family AT3G58690 48.553 2.37e-85 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Gma03g02054 PK_Tyr_Ser-Thr 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02054 K13436 - gmx:100813950 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02054 03 46111228 46123354 Gma03g02054 03 46111228 46123354 ECH
Gma03g02054 03 46111228 46123354 Gma19g02094 19 49808583 49810392 ECH
Gma17g00362 17 2939657 2945195 Gma03g02054 03 46111228 46123354 ECH
Gma07g02260 07 45366165 45367343 Gma03g02054 03 46111228 46123354 ECH
Gma15g01802 15 21076119 21085499 Gma03g02054 03 46111228 46123354 ECH
Gma19g02094 19 49808583 49810392 Gma03g02054 03 46111228 46123354 GST