Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02042 ATGGAGAGAAGTAGTGAAGAGGAGATGTTAATAACGAAAGGTCCATGGACAGAGCAAGAGGATTCTCTTCTCTTCAATTACATCACTGTCCACGGCGAAGGTCACTGGAACTCTGTCGCTCGCTACACAGGTCTAAAACGAACGGGCAAAAGCTGCAGATTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATAACCCTCCAAGAACAGCTCTTGATTCTTGACCTCCATTCCCGTTGGGGCAACAGGTGGTCGAAAATAGCTGAACATTTACCGGGAAGAACAGACAACGAGATAAAGAATTATTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTAAAATGTGATGTGAACAGCAAGCAATTCAGGGACACGTTGCGTTTTGTGTGGATGCCACGTATGCTAGAGCGGATTCGGGCTCAGGCCTCATCATCGGCCCAAGCCCACCAAAGCAGCTTAATCTCCAACAGTAACACTCAAGCACACAGTGGATTGTTGTCATCAGCGCTTCATGCCCACGCGCCTTCTCTCTCTGACTCGAGCGCGTCGTACAATCTTATGGGTGCTGATGCTGGAAGTTGCTCATCTCATAGCTACTACTCAGACATAGCAGGCAATGGTTTTGGTGGTGCGGACTTGTGGACGGATCAAAACATTTGCTTTCTGCAACACCAGCTTGCTCATCATGACTTGTTCTGA 714 0.479 MERSSEEEMLITKGPWTEQEDSLLFNYITVHGEGHWNSVARYTGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIRAQASSSAQAHQSSLISNSNTQAHSGLLSSALHAHAPSLSDSSASYNLMGADAGSCSSHSYYSDIAGNGFGGADLWTDQNICFLQHQLAHHDLF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02042 237 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Gma03g02042 237 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gma03g02042 237 ProSiteProfiles Myb-like domain profile. 13 60 IPR001005 -
Gma03g02042 237 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Gma03g02042 237 CDD SANT 70 109 IPR001005 -
Gma03g02042 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gma03g02042 237 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 3 174 - -
Gma03g02042 237 CDD SANT 15 60 IPR001005 -
Gma03g02042 237 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gma03g02042 237 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 174 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma03g02042 237 Gene3D - 70 111 - -
Gma03g02042 237 SMART sant 12 62 IPR001005 -
Gma03g02042 237 SMART sant 65 113 IPR001005 -
Gma03g02042 237 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 60 IPR017930 -
Gma03g02042 237 Gene3D - 12 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02042 Gma-Chr3 45999186 46000777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02042 6 232 MYB Transcription Factor Family AT2G47190 49.600 2.16e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma03g02042 Myb_DNA-binding 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02042 K09422 - gmx:547458 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02042 03 45999186 46000777 Gma03g02042 03 45999186 46000777 ECH
Gma19g02079 19 49683722 49685675 Gma03g02042 03 45999186 46000777 GST
Gma03g02042 03 45999186 46000777 Gma10g00101 10 1002995 1004327 PCT
Gma03g02042 03 45999186 46000777 Gma02g00094 02 972887 980662 PCT
Gma10g00101 10 1002995 1004327 Gma03g02042 03 45999186 46000777 PCT
Gma02g00094 02 972887 980662 Gma03g02042 03 45999186 46000777 PCT