Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02034 ATGGAGAATAATCCGAAGGAGCTTCCAGAGCAGCAAAGGGTCAATTTCAACGGAGACCCTCACATTCACGACAATGGCAACAGCTTCAACCACTTCCAACCCACACCCGCCGTCGATTCTGGTTACGCTCTTAACCATTCCATGGCTCGTTCTCTCCGCAAACGCCCTTGGCATCACTCCAACAACGGAACTTCTCCAGATCAAGTGGACGTTTCGTGTAAAGTTTATGTAGCACCTGTTCCAAGAACGGCAACGGAGGATGAGATTCGCCCTGTATTCGAAGAACATGGAACTATTGTTGAGATTGTTCTTTTAAAACATAAGAAAACTGGGACACGGCAAGGAAGTTGTTTTGTAAAATATGCAACATTTGATGAAGCTGATAGGGCTATTAAGGTTTTAAACAATAAATATACATTTGCTGGGGAATCATATCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGCCTTGGGGTTCGAGGGTTATGCCGTAACATGGAAAAGAAAGATCCTTTAGAAGAGGTGGCAGATAAAGTTTTTGTCAGTTCCATCAACAAAGAAGCTACAAACAAGGATATTGAAGAAATATTTTCCCCTTATGGGCATGTTGAAGATATCTTCTTTAAAAGCACTCATGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATTGGCTGCAATCAAAGGGCTGAATAAAACCTTCACAATGCGAGGTTGTGATCATCCTTTAATTGTTCGTTTTGCGGATCCTAAGAAGCCTAAGACTGGAGAATCAAGGGGCAACTATTTATCTGTGAATGCAAATTTTGGTCCTTGTTCCCAAGAACCAGCAGTATGGCCACTGCCAAATTTTGGTGATTCCAATACTGGAGGAATTATTCTGCCTCATGCCCCGTATCATTCCACAATTGCACATCCACAAGTTACTTCTCATATGCAAAACTGGGAACCTGGCGCTACTGTGTTACAACATCCATTTCCTCCCCATCAAGTGCATCCACAGGTGGCTTCAATGTCTTTGGGGTCAATTCAAGCTCCCAAATTGTCTTCTCAGCTATTTATTACTGAGGTGCAAAGAGAATCACATCCAGCAGATTCATCGGTTCAAAATATAGAGCAGCAGCTTAGTTCACAGCTGCCTTCTCAGACCGAAAGCAACCCTAGTACAGTTACTGGCATTACCCCGCCTGATATGCCTACAAGTTCCCAAGATGAAGATTTTCCTGAGTGTGACTGGAGTGAACACTACTGCCCCGATGGTGATAAGTACTACTACAACTGTGTAACTTGTGAAAGCAGATGGGATAAGCCTGAGGAGTATGCCTTGTACGAGAAAGAATCTCAGAAGCAGCAGGAGCAGGAGGATAATTCCTGTAGTCTCTCACAATTGTCATTATCTTCCTCTCAACTAGTTGGTCAAAAACAACAGGAAACAGATCATGACCACAAGCAATCAGAAACAAGTCCTGTTGTTGGATAG 1491 0.4272 MENNPKELPEQQRVNFNGDPHIHDNGNSFNHFQPTPAVDSGYALNHSMARSLRKRPWHHSNNGTSPDQVDVSCKVYVAPVPRTATEDEIRPVFEEHGTIVEIVLLKHKKTGTRQGSCFVKYATFDEADRAIKVLNNKYTFAGESYPVVVKFADRELERLGVRGLCRNMEKKDPLEEVADKVFVSSINKEATNKDIEEIFSPYGHVEDIFFKSTHGYAFVKFSNREMALAAIKGLNKTFTMRGCDHPLIVRFADPKKPKTGESRGNYLSVNANFGPCSQEPAVWPLPNFGDSNTGGIILPHAPYHSTIAHPQVTSHMQNWEPGATVLQHPFPPHQVHPQVASMSLGSIQAPKLSSQLFITEVQRESHPADSSVQNIEQQLSSQLPSQTESNPSTVTGITPPDMPTSSQDEDFPECDWSEHYCPDGDKYYYNCVTCESRWDKPEEYALYEKESQKQQEQEDNSCSLSQLSLSSSQLVGQKQQETDHDHKQSETSPVVG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02034 496 Pfam WW domain 414 441 IPR001202 GO:0005515
Gma03g02034 496 Gene3D - 60 159 IPR012677 -
Gma03g02034 496 SUPERFAMILY RNA-binding domain, RBD 55 159 IPR035979 GO:0003676
Gma03g02034 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 138 IPR000504 GO:0003723
Gma03g02034 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 239 IPR000504 GO:0003723
Gma03g02034 496 Gene3D - 401 463 - -
Gma03g02034 496 MobiDBLite consensus disorder prediction 361 411 - -
Gma03g02034 496 MobiDBLite consensus disorder prediction 457 478 - -
Gma03g02034 496 SUPERFAMILY WW domain 415 447 IPR036020 GO:0005515
Gma03g02034 496 MobiDBLite consensus disorder prediction 448 496 - -
Gma03g02034 496 MobiDBLite consensus disorder prediction 361 405 - -
Gma03g02034 496 PANTHER RNA BINDING PROTEIN 52 484 - -
Gma03g02034 496 ProSiteProfiles WW/rsp5/WWP domain profile. 416 443 IPR001202 GO:0005515
Gma03g02034 496 CDD WW 414 443 IPR001202 GO:0005515
Gma03g02034 496 Gene3D - 166 262 IPR012677 -
Gma03g02034 496 SMART rrm1_1 180 250 IPR000504 GO:0003723
Gma03g02034 496 SMART rrm1_1 74 150 IPR000504 GO:0003723
Gma03g02034 496 ProSitePatterns WW/rsp5/WWP domain signature. 416 441 IPR001202 GO:0005515
Gma03g02034 496 SMART ww_5 411 443 IPR001202 GO:0005515
Gma03g02034 496 SUPERFAMILY RNA-binding domain, RBD 175 263 IPR035979 GO:0003676
Gma03g02034 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 254 IPR000504 GO:0003723
Gma03g02034 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 154 IPR000504 GO:0003723
Gma03g02034 496 PANTHER FLOWERING TIME CONTROL FCA-LIKE PROTEIN 52 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02034 Gma-Chr3 45933672 45940091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02034 52 302 Eukaryotic Initiation Factors Gene Family AT1G71770 25.475 2.21e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02034 K13207 - gmx:100795107 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02034 03 45933672 45940091 Gma03g02034 03 45933672 45940091 ECH
Gma19g02071 19 49616658 49628209 Gma03g02034 03 45933672 45940091 GST