Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02016 ATGGCAGAGGTTGTCTTGCTAGTCGATGATTTGAAACTACTTTCTGCGATTCCTCGCTGTAGAATTTGTCATGAAGAAGAGTTTGAAAGCGTAGAAACCTTGGAAGCACCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAACGAAAAAGGAAATACAACCTGTGAAATATGTCTCCAGCAATACGAACCCGGATATACAGCTCCTCCGCCAAAGAAGTCTAAGATAAATGATGAAGCAATGTCTATTAGGGAGGAGGAAGAAGCGTCAAACGCAAGAATAGAGATTATGGTTGAAGGAGTGGCAATGGAAAGCGATTACTCCGAATGCAGCTCTGCCGCTGACAGAAGCGGGTCTTGCTGTCGATCACTTGCAATAGCTTTTACACTAGTCTTACTTGTAAGACATCTTTTCCCAGTGCTTACAAATGGAACGGAAGATTACCCATTTACACTACTTACTGTAATTATACTAAAGGCTAGCGGAATTATTATACCAATGTACATAATTATTAAGATTCTCGGAGCTATTCAGAGTTGTATTCAGCACTATAAGGATGCTGACTATGATACATCAATGTCTGAGGAAGATGACGAAGATGAGATACATCATAATGTAAATCCAAGACATTTATAG 663 0.4012 MAEVVLLVDDLKLLSAIPRCRICHEEEFESVETLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYEPGYTAPPPKKSKINDEAMSIREEEEASNARIEIMVEGVAMESDYSECSSAADRSGSCCRSLAIAFTLVLLVRHLFPVLTNGTEDYPFTLLTVIILKASGIIIPMYIIIKILGAIQSCIQHYKDADYDTSMSEEDDEDEIHHNVNPRHL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02016 220 SMART ringv_2 19 68 IPR011016 GO:0008270
Gma03g02016 220 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Gma03g02016 220 CDD RING_CH-C4HC3_MARCH 20 67 - -
Gma03g02016 220 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 210 - -
Gma03g02016 220 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Gma03g02016 220 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Gma03g02016 220 MobiDBLite consensus disorder prediction 201 220 - -
Gma03g02016 220 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 210 IPR033275 -
Gma03g02016 220 Pfam Protein of unknown function (DUF3675) 73 182 IPR022143 -
Gma03g02016 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 77 IPR013083 -
Gma03g02016 220 SUPERFAMILY RING/U-box 19 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02016 Gma-Chr3 45772487 45775138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02016 20 67 C3H Transcription Factor Family AT2G37950 42.857 4.24e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02016 - - gmx:100802379 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02016 03 45772487 45775138 Gma03g02016 03 45772487 45775138 ECH
Gma19g02052 19 49449994 49452281 Gma03g02016 03 45772487 45775138 GST
Gma03g02016 03 45772487 45775138 Gma10g00129 10 1234567 1237565 PCT
Gma03g02016 03 45772487 45775138 Gma02g00125 02 1205906 1208609 PCT
Gma10g00129 10 1234567 1237565 Gma03g02016 03 45772487 45775138 PCT
Gma02g00125 02 1205906 1208609 Gma03g02016 03 45772487 45775138 PCT