Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02006 ATGTCTGATGAGACCTGGCCACCGAAACTATTTGGTTTCCCACTAACAGAGCAGGAGGACAGAAAATTCAGATGCCACTACTGCAAACGAGTATTCGGGAACTCGCAGGCCTTAGGAGGCCATCAAAATGCCCACAAGAAAGAGCGTCAGAGGGCGAGGCGTTTCCAAATCCACACTCATAGACGCGCCATTGCAGCAGCAGCATCGATATCTTCACATGCAATAATAACATCAGTACCCTCCATTTACTTACGAGGACACCCTCCTACTCCTACTTCTCTTCTACCCATCTTCGATCCTCATCGTCAACCCAATAACACTAAGCACTTCCCATCACGCCCTACTTTCATTCCTTCTTCTTCCAACTACCACCTTACTAATTACACTCAATGCTTTCCTTTTCGGCTTTATGCCTCACCCACTCATGTACTGCAATCCTCTACTCCTAAGGTCCCTCATTTTTCTGCTGAGGGGGAAGTTGATGTCCATCTCAAATTATAA 501 0.4651 MSDETWPPKLFGFPLTEQEDRKFRCHYCKRVFGNSQALGGHQNAHKKERQRARRFQIHTHRRAIAAAASISSHAIITSVPSIYLRGHPPTPTSLLPIFDPHRQPNNTKHFPSRPTFIPSSSNYHLTNYTQCFPFRLYASPTHVLQSSTPKVPHFSAEGEVDVHLKL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02006 166 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Gma03g02006 166 PANTHER ZINC FINGER PROTEIN 5 3 166 IPR044299 GO:0010090
Gma03g02006 166 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Gma03g02006 166 Gene3D Classic Zinc Finger 14 75 - -
Gma03g02006 166 PANTHER ZINC FINGER PROTEIN 6-LIKE 3 166 - -
Gma03g02006 166 Pfam C2H2-type zinc finger 23 48 - -
Gma03g02006 166 SUPERFAMILY beta-beta-alpha zinc fingers 19 50 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02006 Gma-Chr3 45683649 45684149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02006 20 89 C2H2 Transcription Factor Family AT1G68360 48.571 1.65e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g02006 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02006 - - gmx:100799174 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02040 19 49331665 49332475 Gma03g02006 03 45683649 45684149 GST