Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02001 ATGGCGACGAGAAATCGAACTCTAGAGTTCAGAAAACACAGAGACGCCGTGAAAAGCGTGCGCGCTCCTCTCTCCTCCTCAGCATCTAGTCCTGTCATCGAAATGGTTACAACTTCGCTTCTTCCTTCTAATCGATCCTCCTATGCTCCTCTAAGCACCCAGGAACATGCTCCATCCACTTCTAGGGATGCGTTTACTGTGGGGTTGCCGCCATCTTGGGTGGATGATTCTGAAGAAATAGCTACAAATATACAACGTGCTAGGGTTAGAATTTCTGAGTTAACCAAAGCTCATGCGAAGGCTTTGATGCCTTCCTTTGGGGATGGCAAAGAGGATCAGCGTCATATTGAGACTCTCACCCAGGAAATTACTTCTCTCCTCAGAAAGTCTGAAGTGAGGCTCAAAAGACTTTCTGCCGCTGCTGGATCTTCTGAGGATTCTAATGTTAGAAAAAATGTTCAGCGTTCCCATGCTACAGATCTTCAGAACCTGTCAATGGATCTCCGGCGAAAACAGTCAGCATATTTGAAACATTTGCAGCAGCAACAAGAGGGTTATGATGGGGTTGACTTGGAGATGAACTTTAATGGGAGCAAATTTGTATCCCATAATGATGAATTCAGTGATGTGGGTTTTAGTGAAGAGCAAATGACCAAGCTAAAGAGAAGTGAGCAGTTCTCAGAGGAAAGGGAGAGAGAGATTGAACAGGTTGTCAAATCAGTCCATGAACTTGCTCAAATCATGAAGGATCTCTCTGTCCTTGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTTCTACATCCGTTGAAGAGGGTCTTAAGCAGTTGCAAAAGGCAGAGAGAATACAGAAAAAAGGAGGGATGGTTATGTGTGCATCAACGCTTGTTATAATGTGCTTTGTCATGCTAGTTCTCTTGATACTCAAGGAGATTCTCTTCTAG 963 0.4393 MATRNRTLEFRKHRDAVKSVRAPLSSSASSPVIEMVTTSLLPSNRSSYAPLSTQEHAPSTSRDAFTVGLPPSWVDDSEEIATNIQRARVRISELTKAHAKALMPSFGDGKEDQRHIETLTQEITSLLRKSEVRLKRLSAAAGSSEDSNVRKNVQRSHATDLQNLSMDLRRKQSAYLKHLQQQQEGYDGVDLEMNFNGSKFVSHNDEFSDVGFSEEQMTKLKRSEQFSEEREREIEQVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKQLQKAERIQKKGGMVMCASTLVIMCFVMLVLLILKEILF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02001 320 PANTHER SYNTAXIN 1 315 IPR045242 -
Gma03g02001 320 CDD SNARE_syntaxin16 228 285 - -
Gma03g02001 320 SMART tSNARE_6 219 286 IPR000727 -
Gma03g02001 320 MobiDBLite consensus disorder prediction 44 61 - -
Gma03g02001 320 SUPERFAMILY t-snare proteins 69 279 IPR010989 GO:0016020|GO:0016192
Gma03g02001 320 Pfam SNARE domain 260 312 IPR000727 -
Gma03g02001 320 ProSitePatterns Syntaxin / epimorphin family signature. 230 269 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gma03g02001 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 224 286 IPR000727 -
Gma03g02001 320 MobiDBLite consensus disorder prediction 44 63 - -
Gma03g02001 320 Gene3D - 70 278 - -
Gma03g02001 320 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 315 - -
Gma03g02001 320 SMART SynN_4 64 180 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02001 Gma-Chr3 45645525 45649070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g02001 1 309 SNARE and Associated Proteins AT3G05710 67.385 4.82e-153 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02001 K08489 - gmx:100797056 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02001 03 45645525 45649070 Gma03g02001 03 45645525 45649070 ECH
Gma03g02001 03 45645525 45649070 Gma19g02034 19 49286454 49290350 ECH
Gma19g02034 19 49286454 49290350 Gma03g02001 03 45645525 45649070 GST