Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01998 ATGACTGCTGACACCCACGCCGCTCCTAATATCAATCCCAAGGGCCTCCTCTGCAATGCCGCCGCCGGTGCTTCCGCTGGGGTTATTGCTGCTACATTTGTGTGTCCTCTTGATGTCATCAAAACTAGGTTTCAGGTTCACGGTGTCCCGCAGCTCGCGCATGGAAGTGTTAAAGGAAGCATAATAGTTGCTAGTTTGGAACAAATATTTCACAAGGAGGGGTTACGTGGCATGTACCGTGGGCTCGCGCCCACTGTGCTGGCTTTGCTTCCAAATTGGGCGGTTTATTTTAGTGCATATGAGCAGCTTAAGAGCCTTCTTCATTCCGATGATAGCCATCATCTTCCCATTGGAGCTAATGTGATAGCTGCTTCTGGTGCTGGAGCTGCAACTACCATGTTTACAAATCCCCTTTGGGTTGTCAAGACCAGACTCCAAACCCAGGGAATAAGACCTGGTGTTGTGCCATATAGGGGCACACTATCTGCATTGAGGAGAATTGCTCATGAGGAGGGCATTCGAGGGCTGTACAGTGGCCTTGTACCTGCTCTGGCTGGTATCAGTCATGTTGCCATTCAATTTCCTACTTATGAGACAATAAAATTTTATTTGGCAAATCAAGATGACGCAGCAATGGATAAACTTGGTGCACGTGATGTTGCAATTGCATCATCAGTTTCTAAAATTTTTGCATCCACATTGACATATCCTCACGAGGTTGTACGTTCCAGATTGCAAGAACAAGGGCATCATTCGGAGAAACGGTACTCTGGTGTGATTGATTGTATTAGAAAGGTTTTTCAACAAGGTGTACAGGGTTTTTACCGAGGTTGTGCCACCAACCTTCTGAGGACAACACCAGCTGCTGTGATCACATTCACCAGCTTTGAAATGATACACCGATTTCTTGTTTCCCTTTTTCCTTCTGATCCATTTTGTGACGATTGA 948 0.462 MTADTHAAPNINPKGLLCNAAAGASAGVIAATFVCPLDVIKTRFQVHGVPQLAHGSVKGSIIVASLEQIFHKEGLRGMYRGLAPTVLALLPNWAVYFSAYEQLKSLLHSDDSHHLPIGANVIAASGAGAATTMFTNPLWVVKTRLQTQGIRPGVVPYRGTLSALRRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYETIKFYLANQDDAAMDKLGARDVAIASSVSKIFASTLTYPHEVVRSRLQEQGHHSEKRYSGVIDCIRKVFQQGVQGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVSLFPSDPFCDD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01998 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 302 IPR018108 -
Gma03g01998 315 PRINTS Mitochondrial carrier protein signature 19 32 IPR002067 GO:0055085
Gma03g01998 315 PRINTS Mitochondrial carrier protein signature 32 46 IPR002067 GO:0055085
Gma03g01998 315 PRINTS Mitochondrial carrier protein signature 81 101 IPR002067 GO:0055085
Gma03g01998 315 PRINTS Mitochondrial carrier protein signature 130 148 IPR002067 GO:0055085
Gma03g01998 315 PRINTS Mitochondrial carrier protein signature 224 246 IPR002067 GO:0055085
Gma03g01998 315 Pfam Mitochondrial carrier protein 15 109 IPR018108 -
Gma03g01998 315 Pfam Mitochondrial carrier protein 115 206 IPR018108 -
Gma03g01998 315 Pfam Mitochondrial carrier protein 221 304 IPR018108 -
Gma03g01998 315 SUPERFAMILY Mitochondrial carrier 15 298 IPR023395 -
Gma03g01998 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 106 IPR018108 -
Gma03g01998 315 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 311 IPR044712 GO:0006862|GO:0055085
Gma03g01998 315 Gene3D Mitochondrial carrier domain 112 305 IPR023395 -
Gma03g01998 315 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 311 - -
Gma03g01998 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 115 203 IPR018108 -
Gma03g01998 315 Gene3D Mitochondrial carrier domain 3 111 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01998 Gma-Chr3 45620421 45624461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01998 1 310 Chloroplast and Mitochondria Gene Families AT2G47490 75.563 3.62e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01998 K15115 - gmx:100500213 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01998 03 45620421 45624461 Gma03g01998 03 45620421 45624461 ECH
Gma19g02031 19 49263730 49268056 Gma03g01998 03 45620421 45624461 GST