Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01993 ATGGTTTCGCTGAAACTGCAGAAGCGGCTCGCCGCGAGCGTGCTCAAGTGTGGCAGAGGAAAGGTTTGGCTTGACCCCAATGAAGTCAACGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGCTGGTTAAGGATGGGTTTATCATCAGGAAGCCCACCAAGATTCACTCTCGCTCACGTGCTCGTCGAATGAAGGAAGCCAAGAGGAAAGGACGTCACTCTGGATACGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACTAAAATTCTATGGATGAGGAGAATGCGTGTGCTCAGACGCTTGCTTCGCAAGTACAGGGAATCTAAGAAGATTGACAAGCACATGTATCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGAGTTTTAATGGAGAGCATTCATAAGTCCAAAGCTGAGAAGGCAAGAGAGAAGACCTTGTCCGACCAGTTTGAGGCCAAACGTGCCAAGAACAAGGCCAGCAGAGAAAGGAAAATTGCTCGGAGGGAGGAGCGATTAGCCCAAGGTCCTGGAGAAAAAGTATCAGCCGCATCCAGTGCTCCAGCTGCTCCAGCATCACAGCCAGCCCAAGCACCAAAGAAATCCAAGAAGTGA 639 0.4898 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKVSAASSAPAAPASQPAQAPKKSKK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01993 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Gma03g01993 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Gma03g01993 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Gma03g01993 212 PANTHER RIBOSOMAL PROTEIN L19 1 212 - -
Gma03g01993 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 212 IPR039547 GO:0003723|GO:0003735|GO:0022625
Gma03g01993 212 MobiDBLite consensus disorder prediction 57 79 - -
Gma03g01993 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Gma03g01993 212 MobiDBLite consensus disorder prediction 149 184 - -
Gma03g01993 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Gma03g01993 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Gma03g01993 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Gma03g01993 212 Gene3D - 57 193 - -
Gma03g01993 212 MobiDBLite consensus disorder prediction 57 85 - -
Gma03g01993 212 MobiDBLite consensus disorder prediction 149 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01993 Gma-Chr3 45578880 45580928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01993 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.434 1.94e-128 358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01993 03 45578880 45580928 Gma03g01993 03 45578880 45580928 ECH
Gma19g02026 19 49211131 49212841 Gma03g01993 03 45578880 45580928 GST