Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01988 ATGGCTTTCAAGAACTTGTCCGTTCTTACTCTCTGTGTTTCCCTTGTGCTTTCCTTCTTTGCACCGAATTCCATAGCTGCTAACAACCGTGCAGTGGTTCCTCCAGAAACCATTTGCAACTCCACCGTAAACCCTTCCTTCTGCAAAACCGTGCTTGCTAATCAAAATGGCAGCATCGTTGACTACGGTCGAATTTCTGTCCGAAAGTCCTTGTCCCAGTCCCGCAAATTCTTGAACTCAGTAAATTCACTTCTTCAAGACAGATCCTCTTTGTCTCTACCCACAATTCGAGCCCTTGAAGATTGTCAATTCCTCGCTGAACTAAACTTTGAATACTTAACAAACGCACTTGACACTGTTGATAAAGCTAGCGATGTTCTTCCCACCGCTCAAGCCGAAGATCAGCAAACCCTTCTTAGTGCTGTTTTGACAAACGAAGAAACTTGTTTAGAAGGCTTGCAGCAGAGCACAGCTTCTGATCAAAGAGTGAAGAGTGATCTTATCTCATCACTCTCTGATGACAAGAAGCTTCACAGTGTTTCCCTTGACTTGTTCACGAAGGGTTGGGTGGCCGAGAAGAAAATCTCAACATCATGGCAAGTCAATGGGAGACATTTGGATTTCCACAATGGTCGTTTACCATTGAAGATGTCAAACCGTGTACGGGCCATTTATGATTCTGCAAGAGGTCACGGGAGAAAATTACTACAAGATAACAGCCAAAGTGTGTTGGTTAGTGACATTGTGGTTGTTAGTCAGGATGGAAGCGGGAACTTTACCACTATCAACGATGCCATAGCAGTTGCGCCAAATAACACAGTTGCTAATGATGGTTACTTTTTAATTTTTATCACTCAGGGTGTGTATCAAGAATATATATCCATAGCAAAAAACAAAAAGAATTTGATGATGATTGGAGATGGGATCAATCAAACGATTATCACTGGTAATCACAATGTTGTCGATAACTTCACAACATTCAACTCAGCAACATTTGCTGTGGTAGCACAAGGAtttgtagctgttaacataacattccaaaacactgctgggccaagcaagcatcaagcagttgcagtgagaaacggagctgatatgtccaccttctacagctgcagctttgaaggatatcaagacaccttgtacacgcattctcttagacagttttaccgtgaatgtgacatctatggcaccgttgacttcatatttggaaatgctgctgttgttctccaaacatgtaacctatatcctcgccttcccatgagtggacaattcaatgctatcacagcacaaggcagaacagaCCCAAACCAAAACACAGGCACTTCCATACATAACGCCACTATAAAGCCTGCTGATGATTTGGCTCCTTCAGTTGGTACCGTGCAAACGTACCTAGGGAGACCATGGAAAGAGTACTCAAGAACGGTTTATATGCAGTCTTTTATGAATAGTTTCATAAATCCTTCTGGTTGGCATGAATGGAGTGGGGATTTTGCCCTAAGCACCTTGTACTATGCAGAGTATAATAACACGGGACCGGGTTCAAACACCGCAAACCGAGTGACGTGGCCTGGTTATCATGTTATCAATGCTACTGATGCGGCTAATTTTACTGTGTCTAACTTCTTGGATGGAGATAGTTGGCTGCCTCAAACTGGAGTTCCATACGTGACTGGATTGATATAG 1689 0.3546 MAFKNLSVLTLCVSLVLSFFAPNSIAANNRAVVPPETICNSTVNPSFCKTVLANQNGSIVDYGRISVRKSLSQSRKFLNSVNSLLQDRSSLSLPTIRALEDCQFLAELNFEYLTNALDTVDKASDVLPTAQAEDQQTLLSAVLTNEETCLEGLQQSTASDQRVKSDLISSLSDDKKLHSVSLDLFTKGWVAEKKISTSWQVNGRHLDFHNGRLPLKMSNRVRAIYDSARGHGRKLLQDNSQSVLVSDIVVVSQDGSGNFTTINDAIAVAPNNTVANDGYFLIFITQGVYQEYISIAKNKKNLMMIGDGINQTIITGNHNVVDNFTTFNSATFAVVAQGFVAVNITFQNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQTCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNATIKPADDLAPSVGTVQTYLGRPWKEYSRTVYMQSFMNSFINPSGWHEWSGDFALSTLYYAEYNNTGPGSNTANRVTWPGYHVINATDAANFTVSNFLDGDSWLPQTGVPYVTGLI 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01988 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 187 IPR035513 -
Gma03g01988 562 SUPERFAMILY Pectin lyase-like 245 560 IPR011050 -
Gma03g01988 562 CDD PMEI-like_3 37 189 - -
Gma03g01988 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 187 IPR035513 -
Gma03g01988 562 PANTHER PECTINESTERASE 17 561 - -
Gma03g01988 562 Pfam Pectinesterase 249 547 IPR000070 GO:0030599|GO:0042545
Gma03g01988 562 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Gma03g01988 562 PANTHER PECTINESTERASE 17 561 - -
Gma03g01988 562 SMART PMEI_2 30 184 IPR006501 GO:0004857
Gma03g01988 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 185 IPR006501 GO:0004857
Gma03g01988 562 Pfam Plant invertase/pectin methylesterase inhibitor 36 183 IPR006501 GO:0004857
Gma03g01988 562 Gene3D - 246 562 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01988 Gma-Chr3 45532993 45535137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01988 13 562 Carbohydrate Esterase AT1G02810 60.174 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01988 K01051 - gmx:100786124 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02019 19 49156773 49158685 Gma03g01988 03 45532993 45535137 GST
Gma03g01988 03 45532993 45535137 Gma10g00164 10 1529009 1533308 PCT
Gma03g01988 03 45532993 45535137 Gma02g00159 02 1515643 1520376 PCT