Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01984 ATGATAATTAAGCGGAGTTTGAAAACTGGAATACAGAAGTGGAAACAGTGTaagccagagaactgcgataattccgcgattcagaagaagcggaagccagagaaccgcgataaatccgcggttcagaagaagcAGAGAGTAAACGAGGTTTCTTCTGCTGAAGGAGGAGCCTCTGGATCCTGTGAGGTGCAGTCCAATTCAAATTCCGTGGACTCGAATGGCACAATTCAAGACTTGGCCCCACAATCAGAAGAAAGGATTATTCAACCTCGTCCTTCCAGAGGTCGGGCTAAGAAGCTTCCCAGCAGGTTCAGTGATTCTTTTGTTTACGAACGCTTCGGGCTCGAAGGCGAGGATAAGAATACTTTGCAAGACGTTGCTGCCAATGGAAATGAAAGAGATTCTCCTTGTTCTTCAAATTCTGCTGAGTCCGGTGATTTCAAGTACTTGGTTAAGACCGTTAAGATGACGGTGAACGGGGGTCGTAAGTTGTTGGTTAAAGAAAAGAGTAATGATGCGGCTGGACCTAGTTCAAATGCTGTGGGTGTGGAAGGAAATGGTAAAAAGAAAGACATTTTCAAATTAGATGATTTTATTTTGGGTGATATAGTTTGGGCAAAATGTGGGAAGAAGCATCCTGCTTGGCCTGCTATAGTCATTGATCCCCTCTTGCAAGCTCCCAAATCCGTCTTGAGCTGTTGTGTTCCTGGTGCACTTTGCGTTATGTTTTTTGGCTATTCCAAAAATGGAAAGCAAAGGGACTATGCGTGGGTAAAGCAGGGGATGATATTCCCGTTCTTGGAATTCATGGACAGATTCCCCGGGCAGTCCCAATTGCACAAATGTAAAGCAAGTGACTTTAACGGTGCATTGGATGAGGCATACTTGGTGGAAAATGGCATTTTGGACGTACAATTGGGAGCTGAGCAAGATATGGAAGGTGAAGGTTCCTGTGTTGACCAGGAATATGCCGATCAAGACCAGGATACACTATCTTGTGCTGGCTGTGGTTTGATGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGTTGTGATCCTCAGCACTATTGCAAGCCTTGTGCAAAGTTAATAAAATCGAAACAATACTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGAATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATTTCCAGCAAACATTTCAAGGATCTGGAAAATACGGATTACTATTGCCCCGATTGCAAGGGAAAATTCAACTGTGAATCATCAACATCACAAACATACAAGTCAAAAAATATATCATTGGAGACTGGCCCAAAACCTGCATTACCTGAGAATCTAGGGGTGGTATGCAATGGCATGAAAGGAATCTATATTCCAAATGATCATATGATTATGTGCAAGTGTTGCTTGTGTGGTTCAAGGACGCATACACTTACTGACTGGGAAAGACATGCAGGTTCCAAAGCCAGAAAATGGAGATATAGTGTGAAAGTAGAAAGCACAATGCAACCGCTCAAAGAATGGATCGATGAACACAATTCCGGAGCTGGAACTTCCCTGCAGTTAGATCAGCAACAAATACTCTCCTTTTTGCAAGagaaatatgagccagtttatgcaaactggacaacagaaagatgtgccatttgcaggtgggttgaagattgggaagataacaaaattatcatctgtaacagGTGCCAAATTGCTGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGCCTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGCATGTCATTTACATATAGTGGGGCTCTGAAGCCAACAGATGTTGAGATGTTGTGGGTTCATGTCACGTGCGCTTGGTTTCAGCCTGAAGTTCTTTTCCAAAATGACAAGGCAATGGAACCAGCCTCTGGAATATTCAAGATTCCTCCTAATTCCTTTTCAAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCATGTACAAGTTGTTGCAAGTGTGCTACATATTTTCATGTAATGTGCGCGTCAAGAAAGGGATATAGCATGGAATTGCATTCGACAGAAAAGAATGGGACTCTAATAACGGAGAAGCTAATATATTGTGCACGTCACAGGGTCCCAAACCCAGAATCAGGACTGGTTGTACATACACCCCAGGAGGTATTCTCACCGACAACTTCACTTCGAAATCACCTGGGGAGCATCAGGGGATCAAGGCTGGTTTCATCAGAGATTATGGAACTTCCCAAAACTGTAAACTCTGAAATTAACGAGATTGAGCCACTGTCTGCAGCGAGATGCCGTGTGTTCATAAGGCCTTCCCGTAAGAAGGATGAAGTGCCAATCATTCACTTGCTTGGGAGGACAAACCTTCATTCTTTAAGTGCAATAACTCAATTGAACAGCAATAAGGATGCTCAAGTATTTTCATCTCTTAAGGAACGTCTTCACCATTTACAGAAAACAGAAAACCAAAAAGTTTGCTTAGGAAAATCAGGTATTCATGGATGGGGCCTCTTTGCTCGTAGAGATCTGGAAGAAGGAGAAATGGTTGTTGAATATCGTGGCGAGCAGTTACGACGTAGTATCACTGACCTAAGGGAAGCACAGTATCGTTCAGAAGGCAAAGATTGTTATTTCTTCAAGATTAGCGAGGAAGTGGTGATTGACGCAACGGATAAGGGCAATATTGCACGTTTAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTGTGCCTTTGAGTGATCAGGAGAACAGGATTGTTCTTATTGCCAAGACCAATGTTTCAGCTGGTGAAGAACTAACGTATAATTACTCGTTCGATGATGAGCGGGATGAAGAAAAGGTTGTCTGTCGCTGTAAAGCCCCTAACTGTAGCGGATTTATGAACTAG 2970 0.404 MIIKRSLKTGIQKWKQCKPENCDNSAIQKKRKPENRDKSAVQKKQRVNEVSSAEGGASGSCEVQSNSNSVDSNGTIQDLAPQSEERIIQPRPSRGRAKKLPSRFSDSFVYERFGLEGEDKNTLQDVAANGNERDSPCSSNSAESGDFKYLVKTVKMTVNGGRKLLVKEKSNDAAGPSSNAVGVEGNGKKKDIFKLDDFILGDIVWAKCGKKHPAWPAIVIDPLLQAPKSVLSCCVPGALCVMFFGYSKNGKQRDYAWVKQGMIFPFLEFMDRFPGQSQLHKCKASDFNGALDEAYLVENGILDVQLGAEQDMEGEGSCVDQEYADQDQDTLSCAGCGLMLPCKTMKKIKDSSCDPQHYCKPCAKLIKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISSKHFKDLENTDYYCPDCKGKFNCESSTSQTYKSKNISLETGPKPALPENLGVVCNGMKGIYIPNDHMIMCKCCLCGSRTHTLTDWERHAGSKARKWRYSVKVESTMQPLKEWIDEHNSGAGTSLQLDQQQILSFLQEKYEPVYANWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRACETPDVERECCLCPVKGMSFTYSGALKPTDVEMLWVHVTCAWFQPEVLFQNDKAMEPASGIFKIPPNSFSKTCVICKQSHGSCTSCCKCATYFHVMCASRKGYSMELHSTEKNGTLITEKLIYCARHRVPNPESGLVVHTPQEVFSPTTSLRNHLGSIRGSRLVSSEIMELPKTVNSEINEIEPLSAARCRVFIRPSRKKDEVPIIHLLGRTNLHSLSAITQLNSNKDAQVFSSLKERLHHLQKTENQKVCLGKSGIHGWGLFARRDLEEGEMVVEYRGEQLRRSITDLREAQYRSEGKDCYFFKISEEVVIDATDKGNIARLINHSCMPNCFARIVPLSDQENRIVLIAKTNVSAGEELTYNYSFDDERDEEKVVCRCKAPNCSGFMN 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01984 989 SUPERFAMILY Tudor/PWWP/MBT 197 298 - -
Gma03g01984 989 SMART PostSET_3 973 989 IPR003616 -
Gma03g01984 989 Pfam PHD-finger 568 602 - -
Gma03g01984 989 Pfam PHD-finger 371 424 IPR019787 -
Gma03g01984 989 Pfam PWWP domain 201 294 IPR000313 -
Gma03g01984 989 ProSitePatterns Zinc finger PHD-type signature. 556 601 IPR019786 -
Gma03g01984 989 ProSiteProfiles Post-SET domain profile. 973 989 IPR003616 -
Gma03g01984 989 SMART set_7 848 971 IPR001214 GO:0005515
Gma03g01984 989 PANTHER PHD FINGER PROTEINS 1 989 - -
Gma03g01984 989 CDD SET_SETD1-like 837 984 - -
Gma03g01984 989 Pfam SET domain 859 964 IPR001214 GO:0005515
Gma03g01984 989 ProSiteProfiles Zinc finger PHD-type profile. 553 604 IPR019787 -
Gma03g01984 989 ProSiteProfiles PWWP domain profile. 200 269 IPR000313 -
Gma03g01984 989 ProSiteProfiles Zinc finger PHD-type profile. 369 425 IPR019787 -
Gma03g01984 989 CDD PHD_TCF19_like 372 422 - -
Gma03g01984 989 SUPERFAMILY FYVE/PHD zinc finger 369 428 IPR011011 -
Gma03g01984 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 363 428 IPR013083 -
Gma03g01984 989 SUPERFAMILY FYVE/PHD zinc finger 553 615 IPR011011 -
Gma03g01984 989 MobiDBLite consensus disorder prediction 19 100 - -
Gma03g01984 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 547 604 IPR013083 -
Gma03g01984 989 SMART PHD_3 371 423 IPR001965 -
Gma03g01984 989 SMART PHD_3 672 728 IPR001965 -
Gma03g01984 989 SMART PHD_3 555 602 IPR001965 -
Gma03g01984 989 MobiDBLite consensus disorder prediction 45 82 - -
Gma03g01984 989 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 729 IPR013083 -
Gma03g01984 989 CDD PHD_ATX3_4_5_like 555 601 IPR042011 -
Gma03g01984 989 SUPERFAMILY SET domain 842 986 IPR046341 -
Gma03g01984 989 Pfam PHD-zinc-finger like domain 609 727 - -
Gma03g01984 989 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 27 989 IPR025780 -
Gma03g01984 989 Gene3D - 192 299 - -
Gma03g01984 989 ProSiteProfiles Extended PHD (ePHD) domain profile. 607 728 IPR034732 -
Gma03g01984 989 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX3 1 989 - -
Gma03g01984 989 Gene3D SET domain 819 989 IPR046341 -
Gma03g01984 989 MobiDBLite consensus disorder prediction 24 44 - -
Gma03g01984 989 ProSiteProfiles SET domain profile. 848 965 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01984 Gma-Chr3 45507618 45515675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01984 488 727 C2H2 Transcription Factor Family AT3G14740 26.984 1.82e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma03g01984 zf-HC5HC2H_2 1.4e-25 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01984 - - gmx:100785063 2046.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02015 19 49130302 49138307 Gma03g01984 03 45507618 45515675 GST