Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01983 ATGACTACTATGGAGCCAGACGTTGAATCCAAGTATGCCCACAACGGCAAGGTCATGGTGGGCACCGCCATTCTCCTCTTCATTCTTATAATAATCATTATTTTCTTCCACACCTTCGTCCGCTTCTGCCGCCGTCGCCGCCGTCGCCTCTTCTCTCGTTCGCTTCCGACCAATTCCTCCGCCGCCGCCTCTCTCGACGACCCGTGCCTCGACCCTTCCGTCATCAAGTCCCTTCCCACTTTTACTTTCTCCGCCGCCACCCACCGCTCTCTCCAggactgcgccgtttgcctgtcggagttcgccgacggcgacgagggccgcgtgctcccgaattgtaagcacgctttccacgcccattgcatcgacacgtggttcgggtctcactccaagtgtcctctctgccgaaccccgGTCCTACCGGCCACGGGTTCAGCTGACACTGAACCGGGTTCGGTTTCCGAAGCGGGTGAGGGTTGCTCCTCATCGTCTTTGCCTCCGCCGATTGGGTGTCCGAGAAAGCCATTGGATATAAATATAATCATAGAGATTCCAGAGGTGGAAAGAGGGTCTGATTCTGTAACCGGAGATCAAGGGTTCAGATGGTCATTGAAGAGGTTTTGCAACGTTTAA 633 0.4186 MTTMEPDVESKYAHNGKVMVGTAILLFILIIIIIFFHTFVRFCRRRRRRLFSRSLPTNSSAAASLDDPCLDPSVIKSLPTFTFSAATHRSLQDCAVCLSEFADGDEGRVLPNCKHAFHAHCIDTWFGSHSKCPLCRTPVLPATGSADTEPGSVSEAGEGCSSSSLPPPIGCPRKPLDINIIIEIPEVERGSDSVTGDQGFRWSLKRFCNV 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01983 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 142 IPR013083 -
Gma03g01983 210 MobiDBLite consensus disorder prediction 144 171 - -
Gma03g01983 210 MobiDBLite consensus disorder prediction 147 161 - -
Gma03g01983 210 CDD RING-H2_EL5_like 93 136 - -
Gma03g01983 210 Pfam Ring finger domain 93 136 IPR001841 -
Gma03g01983 210 SUPERFAMILY RING/U-box 74 144 - -
Gma03g01983 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 155 - -
Gma03g01983 210 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Gma03g01983 210 SMART ring_2 94 135 IPR001841 -
Gma03g01983 210 PANTHER RING-H2 FINGER PROTEIN ATL64 9 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01983 Gma-Chr3 45505179 45506267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01983 12 148 Rapid Response to Elicitors AT3G16720 43.709 8.29e-36 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01983 - - gmx:102665377 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01983 03 45505179 45506267 Gma03g01983 03 45505179 45506267 ECH
Gma19g02014 19 49122770 49123952 Gma03g01983 03 45505179 45506267 GST