Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01973 ATGGCGTCGGGGTGGGGAATCACAGGAAACAAAGGTCGCTGCTACGATTTCTGGATGGATTTCAGCGAGTGCATGTCTCGCTGCCGAGAGCCCAAGGACTGTGCTCTTCTCCGCGAAGACTACCTCGAGTGCCTCCACCATTCCAAGGAGTTTCAACGACGAAACCGAATTTACAAGGAGGAGCAGCGCAAACTAAGGGCTGCTTCCAGGAAAGGCCAGGAGGATGGGAATTTTAATTTTCTCTCTGAATTTGCTCAACTGTGGCTTTCACCTTCACACGGGTCTTGGAAAATAATATATATTTTTTTAATTGTATCGTGCTGTTGCTTATGTTTTAATTTTTTTTCATGTGTCGCAGAAAAGAGAATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTCTGAAGTATGGACACATAACACACATTGACCTAAAGGTTCCCCCAAGACCACCTGGTTATGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGATACAATAGTCACAGCAATGGCCGAGGTGGACGTGGGGTGTCTAGGCGCTCTGAATATCGTGTTCTAGTCTCTGGATTGCCCTCTTCGGCATCCTGGCAGGATCTTAAGGATCACATGCGTAAGGCAGGGGATGTTTGTTTTTCTCAAGTTTTTCATGATGGAAGGGGTACTACCGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGGGATATGTTCGGGTGAGAGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGGAGCTATAGCCGCAGTCGTAGCCGTAGCCGTAGTTACAGTCGGGACCGGAGCCAAAGCAAATCTCCAAAGGGTAAGTCTTCACAGCGTTCACCTGCTAAATCTCCATCAAGATCTCCCTCTCGTTCAAGATCAAGGTCCCGATCGTTATCAGGATATGGAAACTTGCAGCGTACTGGAAATTGGAAATTAGGATCTTGGTGGGATTTGGTTCAATTGTCTGCAACTCATTTTGTTGTGGAGATTGGGAACCAAGGAGGTCATGGATTGCCATTTTAG 1263 0.4632 MASGWGITGNKGRCYDFWMDFSECMSRCREPKDCALLREDYLECLHHSKEFQRRNRIYKEEQRKLRAASRKGQEDGNFNFLSEFAQLWLSPSHGSWKIIYIFLIVSCCCLCFNFFSCVAEKRMSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYNSHSNGRGGRGVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRDRSQSKSPKGKSSQRSPAKSPSRSPSRSRSRSRSLSGYGNLQRTGNWKLGSWWDLVQLSATHFVVEIGNQGGHGLPF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01973 420 Gene3D - 118 230 IPR012677 -
Gma03g01973 420 SMART rrm1_1 130 200 IPR000504 GO:0003723
Gma03g01973 420 SMART rrm1_1 234 307 IPR000504 GO:0003723
Gma03g01973 420 MobiDBLite consensus disorder prediction 200 230 - -
Gma03g01973 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 311 IPR000504 GO:0003723
Gma03g01973 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 297 IPR000504 GO:0003723
Gma03g01973 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 198 IPR000504 GO:0003723
Gma03g01973 420 SUPERFAMILY RNA-binding domain, RBD 127 297 IPR035979 GO:0003676
Gma03g01973 420 CDD RRM1_SF2_plant_like 130 200 - -
Gma03g01973 420 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 11 52 - -
Gma03g01973 420 MobiDBLite consensus disorder prediction 200 229 - -
Gma03g01973 420 Gene3D - 232 310 IPR012677 -
Gma03g01973 420 Pfam NADH:ubiquinone oxidoreductase, NDUFS5-15kDa 12 64 IPR019342 -
Gma03g01973 420 MobiDBLite consensus disorder prediction 308 383 - -
Gma03g01973 420 CDD RRM2_SF2_plant_like 233 308 - -
Gma03g01973 420 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 125 377 - -
Gma03g01973 420 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 125 377 - -
Gma03g01973 420 MobiDBLite consensus disorder prediction 337 351 - -
Gma03g01973 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 204 IPR000504 GO:0003723
Gma03g01973 420 MobiDBLite consensus disorder prediction 352 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01973 Gma-Chr3 45427822 45439828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01973 125 295 Eukaryotic Initiation Factors Gene Family AT4G34110 23.864 5.65e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01973 K12890 - gmx:100789847 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g02007 19 49064793 49068122 Gma03g01973 03 45427822 45439828 GST