Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01947 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGGGAAGAAGTTCATCAAGAAAGTCAGCACCAACATCAACAAAGCCAACTTCATGACTCAAGTTCAGGACCATCCGGTGCTTGCAATAGCAATGCCTCCACTAATCAACAACAAACCAAGAAGAAACGAAACCTTCCTGGAACCCCAGGCAAATATTCAACTACCTCAACTTCATTTTTTTATCCTAATGCTGAAGTTGTTGTCTTATCACCAACCACACTAATGGCAACAAATAGAttcgtgtgtgagatctgcaacaaaggatttcagagggaccaaaaccttcagttgcaccgcagaggtcacaatcttccgtggaaactgagacaaagaACAAGCGCTGAGGTGAAGAAAAGGGTCTATGTGTGCCCTGAGCCATCATGCGTGCACCATAACCCAGCTCGTGCACTAGGGGACCTCACTGGCATCAAAAAGCATTATAGCCGCAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCCAAAAGATACGCAGTCCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACTAGGGAATACAAATGTGATTGTGGTACCATATTTTCCAGGAGAGATAGTTTCATCACCCACAGAGCTTTCTGTGACGCATTAACCGAAGAAAACAACCGAGTGAACAACCAGGGATTAACAAGTGGCATGCCACCAAACTTGCAAAGTAAAATACCTGATCTCATGTCCACCATGCCCCTAACAACTAGTCCCAACACAACAACCAAATTCGGGGACTATGACCCTAAGAACCCTCTAAAATCACTAGCCCAAGAACTTGTCCCAATACCCTTCAAGCCCACAAGCATGGGAGGGGGCATGTTCTCCACCAATGCAGGTGCACGTTTTGGTGGCCCAAAAACCATGTCTCCCTCTTCTTCCAGCCTCCAACTAGGTTCCAGCACCTCATCAAGCTTCAATTACTTGCAAGATAGCAAAAACGGAGGACTAATCGCAGCCTCGGCTCAAATGTCCGCAACAGCTTTGTTACAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAATAGTATTAACTCCCCAATGATGCAAAAAGGCTTTGTTGGTGGCACTACCACTGGTCCTGATCATGTTTCTTTCACTACTAGGCCACCATATTATGGTGCTATGCTTCAGCACAACAACTCCTATGACCACTTCTCTCCACAGCATGATCTTTCCAACATGGCTGGGGTGAGTGGTGGAGGAGCATTCATCAATCAATTGTTTCATAAAGGACAAGAAATTTCACAAGTTTTTGACACTAACACTACAATGAATGGTGTGGGAATGTTCAGCCAAATGCCAATGGGGAGTGAACACAATCACAACCAAGGGTTGATGAAGAATGTGGAACAAGAGGTTAGTAATGGTTCCAGTTTGATACATGTAAGAGATGTGAGTGATGGTAACCACACAATGCAGCCATCAAGGTTTGGAGGGAGTGACATGACAACTGTTCATGACTTCTTGGGGATTGGTGGTTCAACTTCAAGAGTTATGAATCATTTTCATCACCATTTTCCACACGAGGATTCGGCTATTGAGGAACCCATGTGGGATGTTTGA 1632 0.4203 MSNISGDEGSFSSGNNGEEVHQESQHQHQQSQLHDSSSGPSGACNSNASTNQQQTKKKRNLPGTPGKYSTTSTSFFYPNAEVVVLSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSAEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNNQGLTSGMPPNLQSKIPDLMSTMPLTTSPNTTTKFGDYDPKNPLKSLAQELVPIPFKPTSMGGGMFSTNAGARFGGPKTMSPSSSSLQLGSSTSSSFNYLQDSKNGGLIAASAQMSATALLQKAAQMGATASNSINSPMMQKGFVGGTTTGPDHVSFTTRPPYYGAMLQHNNSYDHFSPQHDLSNMAGVSGGGAFINQLFHKGQEISQVFDTNTTMNGVGMFSQMPMGSEHNHNQGLMKNVEQEVSNGSSLIHVRDVSDGNHTMQPSRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHFPHEDSAIEEPMWDV 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01947 543 MobiDBLite consensus disorder prediction 1 72 - -
Gma03g01947 543 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 118 IPR013087 -
Gma03g01947 543 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Gma03g01947 543 SUPERFAMILY beta-beta-alpha zinc fingers 95 193 IPR036236 -
Gma03g01947 543 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 526 - -
Gma03g01947 543 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 526 - -
Gma03g01947 543 Pfam Zinc finger, C2H2 type 96 118 IPR013087 -
Gma03g01947 543 Gene3D Classic Zinc Finger 77 141 - -
Gma03g01947 543 SMART c2h2final6 172 192 IPR013087 -
Gma03g01947 543 SMART c2h2final6 137 167 IPR013087 -
Gma03g01947 543 SMART c2h2final6 96 118 IPR013087 -
Gma03g01947 543 Gene3D Classic Zinc Finger 151 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01947 Gma-Chr3 45288790 45291659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01947 35 386 IDZ Gene Family AT3G50700 51.697 3.55e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g01947 zf-C2H2 0.0056 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01947 - - gmx:100779705 1082.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01947 03 45288790 45291659 Gma03g01947 03 45288790 45291659 ECH
Gma19g01985 19 48919396 48921174 Gma03g01947 03 45288790 45291659 GST