Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01929 ATGGAGCCTGCAACCGAGAAGAGAGAGGATTTTGGGAAGTTGCAGTACGGATGCGAGCACTATAAGAGACGATGCAAAATTCGAGCACCATGCTGCAATCAGATTTTTCCATGTCGTCACTGCCACAACGACGCCGCGAACTCATCTAGCAACCCCGCAGATCGTCATGAACTTGTTAGACGCGATGTTAAGCAAGTTATATGCTCTGTCTGTGATACTGAACAGGAGGTTGCCAAGGTGTGTTCTAGCTGTGGCGTCAATATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACGGATAAAGGACAATTCCATTGTGATGAATGCGGCATTTGCAGGGTTGGTGGTCGTGATAAGTTCTTTCACTGTAAGAAATGTTGTGCTTGCTATTCAGTGAGTGTGCAAAACAATCACTCATGTGTAGAGAACTCAATGAAGAGTTTCTGCCCTATCTGTTTGGAGTACCAATTTGATTCAATAAAAGGCAGCACCATTTTGAAGTGTGGACACACAATGCATATGGAGTGCTATCGAGAGATGGCAACTCAAAATCAGTATCGCTGTCCTATATGCTTGAAGACAATAGTCAATGATATGAACTGGGAATATTTAGATCGAGAGATTGAAGGCGTTCATATGCCTGAGGAGTACAAGTTTGAGGTTTCAATTCTATGCAATGATTGTAACTCTACCAGCACAGTATCTTTTCACATATTTGGTCACAAGTGTTTACAGTGCGGTTCGTATAACACCCGTAGGATTTCGAAACCCAAACAAGAAGGTTTGGGTGTTAGTGGAACCTAA 816 0.424 MEPATEKREDFGKLQYGCEHYKRRCKIRAPCCNQIFPCRHCHNDAANSSSNPADRHELVRRDVKQVICSVCDTEQEVAKVCSSCGVNMGEYYCEICKFYDDDTDKGQFHCDECGICRVGGRDKFFHCKKCCACYSVSVQNNHSCVENSMKSFCPICLEYQFDSIKGSTILKCGHTMHMECYREMATQNQYRCPICLKTIVNDMNWEYLDREIEGVHMPEEYKFEVSILCNDCNSTSTVSFHIFGHKCLQCGSYNTRRISKPKQEGLGVSGT 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01929 271 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Gma03g01929 271 Gene3D - 223 263 - -
Gma03g01929 271 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Gma03g01929 271 SUPERFAMILY CHY zinc finger-like 14 87 IPR037274 GO:0008270
Gma03g01929 271 Pfam Ring finger domain 153 195 IPR001841 -
Gma03g01929 271 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Gma03g01929 271 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Gma03g01929 271 SUPERFAMILY RING/U-box 152 199 - -
Gma03g01929 271 Pfam Zinc-ribbon 203 256 IPR039512 -
Gma03g01929 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 205 IPR013083 -
Gma03g01929 271 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 9 258 - -
Gma03g01929 271 PANTHER ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN 9 258 IPR031109 GO:0008270|GO:0016567
Gma03g01929 271 SMART ring_2 153 195 IPR001841 -
Gma03g01929 271 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01929 Gma-Chr3 45163118 45166616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01929 10 258 C2H2 Transcription Factor Family AT3G18290 42.248 7.78e-53 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01929 K10144 - gmx:100818374 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01929 03 45163118 45166616 Gma03g01929 03 45163118 45166616 ECH