Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01928 ATGAGTGGTGAAGCGCGATCCTGTGACTACTGTGGCCACTCCACAGCACTTCTTTACTGCAGAGCCGATTCAGCAAAACTCTGTTTCTCGTGCGATCGCGAGGTTCACTCCACCAACCAGCTCTTCTCGAAACACACGCGCACGCTGCTCTGCGACGCATGCGATCATTCCCCTGCCACCATACTCTGTTCCACCGACACCTCTGTTCTGTGCCAGAACTGCGACTGGGAGAAGCACAACCCTGCGCTCTCCGATTCCCTTCACGAACGAAGGCCCCTCGAAGGCTTCACTGGGTGCCCTTCAGTCTCCGAACTCTTATCCATCGTGGGGTTTTCGGATTTAAGCAAAAAATCTCTTCTTTCTTCGCCTCAGGGAAGTGGCGCTGATGGGATCTTCGGTGGAGAAATTGAAGGGCTTTCGGATTTGTTTGTGTGGGATTCTCCTTCTTTCGTTACGCTTGATGATTTGATTTCTTCTTCTCCTTCTTCTCATAGCTTTCAGGCCATGGAGGTTCCTCCTCTGCCCAAGAATCGGAAGGCTGCTTGTGGGCAACACAAAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAAGTCTGAGCCATTGGACCTTGAACCATATGTGTCATCGGGGAACTTGTCCTCGGGTTTTGAACGTGAACCAGAGGCTGATATCTTTCCTTCTCATGAGTGGCATAGAGAAAGCAGCGAGCCTATGTATCAGGTTGTTCCTCCTGACCCATTAATGAGAACTTATACAGAAGAAATTCCATTTAAACATTCTACTTCTGCTGTTGGGGAAACTCAAACCTACGGTGACAATGGAGGAAAACCATCCATTTCTCTTAAATCTGAAACCCTATCAACTACTCCCAAAGCTGCAGCATGTGAGTTAACAAGCCAAGAAAGAGATTCTGCATTATTACGGTACAAGCAGAAGAAGAAAACTAGGAGATTTGACAAACACATAAGGTATGAATCACGAAAAGTTCGGGCAGAAAGCAGGGTAAGAGTCAAGGGTCGATTTGCCAAGATGGAACATGAACATTGA 1050 0.4771 MSGEARSCDYCGHSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDHSPATILCSTDTSVLCQNCDWEKHNPALSDSLHERRPLEGFTGCPSVSELLSIVGFSDLSKKSLLSSPQGSGADGIFGGEIEGLSDLFVWDSPSFVTLDDLISSSPSSHSFQAMEVPPLPKNRKAACGQHKEEILSQLRELAKSEPLDLEPYVSSGNLSSGFEREPEADIFPSHEWHRESSEPMYQVVPPDPLMRTYTEEIPFKHSTSAVGETQTYGDNGGKPSISLKSETLSTTPKAAACELTSQERDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAKMEHEH 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01928 349 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 4 347 - -
Gma03g01928 349 CDD Bbox1_BBX-like 8 50 - -
Gma03g01928 349 SMART bboxneu5 51 93 IPR000315 GO:0008270
Gma03g01928 349 SMART bboxneu5 3 50 IPR000315 GO:0008270
Gma03g01928 349 Pfam CCT motif 303 345 IPR010402 GO:0005515
Gma03g01928 349 ProSiteProfiles Zinc finger B-box type profile. 46 93 IPR000315 GO:0008270
Gma03g01928 349 ProSiteProfiles Zinc finger B-box type profile. 3 50 IPR000315 GO:0008270
Gma03g01928 349 Pfam B-box zinc finger 50 93 IPR000315 GO:0008270
Gma03g01928 349 Pfam B-box zinc finger 5 48 IPR000315 GO:0008270
Gma03g01928 349 ProSiteProfiles CCT domain profile. 303 345 IPR010402 GO:0005515
Gma03g01928 349 CDD Bbox1_BBX-like 50 93 - -
Gma03g01928 349 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01928 Gma-Chr3 45154402 45158088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01928 6 318 C2C2-CO-like Transcription Factor Family AT2G47890 41.768 8.56e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma03g01928 zf-B_box 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01928 - - gmx:100817838 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01928 03 45154402 45158088 Gma03g01928 03 45154402 45158088 ECH
Gma19g01970 19 48783459 48788096 Gma03g01928 03 45154402 45158088 GST
Gma03g01928 03 45154402 45158088 Gma10g00207 10 1889480 1891888 PCT
Gma03g01928 03 45154402 45158088 Gma02g01392 02 16088863 16091850 PCT
Gma10g00207 10 1889480 1891888 Gma03g01928 03 45154402 45158088 PCT
Gma02g01392 02 16088863 16091850 Gma03g01928 03 45154402 45158088 PCT