Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01921 ATGGACTCTCCAGAGAAAAAACAAGGCCTTCCCTCTAATGAAGGCGTGCAGGATATTTTGTACACTGAACTGTGGCGTGCATGTGCTGGGTCATTCGTTTATGTTCCTCGCGTTGATGACAGGGTTTTCTACTTCCCTCAAGGCCACTTGGAGCAGGTTGCTGCATATACTCAGAATCAGCCAGATAGTCACCTGGAAATTCCTGTGTATGATTTGCCTTCGAAGATCTTATGCAAGATTATGAATGTTGAATTAAAGGCCGAAGCTTACTCAGACGAGGTTTATGCTCAAGTTACATTAGTTCCGGAGGTCCAGAAAGATAACCTTTGTTTTGAGGAGGAGGTAAACATAGATCAGATACCTTCCAGAAATGCAGCTTATTCTTTTAGTAAGATACTGACTCCGTCAGACACAAGTACACATGGTGGATTCTCTGTTCCGAAGAAATATGCTGATGAATGCTTCCCTCCGCTGGACATGACTCTTCAAACACCAGCGCAGGAAATTGTTGCAAAGGACTTGAATGGATTTGAGTGGCGTTTTCGTCACATATATCGTGGTCAGCCCAAACGACACTTGCTTACTAGCGGTTGGAGCTTATTCGTGAATGCAAAGAAACTTGTTGCTGGAGATTCATGCATTTTCGTTAGAGGGGAATCTGGAGAACTTCGTGTTGGGATTCGTCGGGCAGCAGAAAATCTCAGCAATATATCGCAATCTTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGACTAATGCTTCCAATGCTGTTGGCAACAGAACCATGTTTCTTGTCTATTACCGCCCGTGGACAAATCCCTTTGAATTTATTGTCCATCTCCAAACCTATTTGAAGTCAACTTTACAAGACTATCCAATTGGAACGAGGGTACAAATGCAGCATGAAGTTGAAGAATCTTTAAGAAGacttgcaggtacgataattggtaatgaagatatcgatagtattaggtggcctggttctgcatggagacgtctcaagGTGCAATGGGACGCCATAGTAGAAGACAAAATGCATCCTGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGAATCTGCCAAGGAGAAGAAGCAAGTTCCTGCTCTCCCCACCAAGAAAAAGGGGCATGCACTTCTTAACCAGCGCTCTTTGCCTGGAATAAGTGGCTTTGGCAAGAATGATGTTCATCAGAATTCAGCTGGCCCTTCGTCTCAGACTCGGAGGGCAGATGGAGACCTGCAAGGTCAAGATTACAGCGGCCTATCTCCTCCACAGCCTTTGCAAAGAGCACCATCAACTGATATAATCCGCCCATCAAAGGTCCCAATCCGTGGCTCGCGGTTCGGGAAGGAGAATCGGAATCAGCATCCCTTTCTCAAGCAAGATCCTCTTCATAAATCTCTTGGCAGATCAATgtcacttacacatgaagacttgtcaattacaagctcaaacctaACTTCCATTGGTTCTGAATCCCTTGGAATGCCTTCTACTGAATCTAGAGATGAAAATGATGCTCCTTTTGGGCAGCCTGGCAGTTCTAGTACATTCAAACTTTTTGGAGTTAACTTAATTGACAGCTCCCCTGAGATCCCATCGGTTAATTTTGTTGATCTCAACAAGACTTCAAGTCTTCCTTCTAGTCCTCCAATGGGTGTTGCCCCAGGAAAAACATGCAAGAAGTGTCGCTGTGTTAataatcggagctgcacaaagGTGCTTAAGCTGGGAAATGCTCTTGGAAGAGCAGTTGACCTTGCACGCTTTAATGGGTATACCGAACTTATTGCTGAATTGGACTCCATGTTCGATTTTCAAGGAACCTTGATAAGCGGAGGTAGTGGGTGGCACGTTACCTGCTTGGATGATGAAGGAGATATGATGCAACTTGGAGATTATCCCTGGCAGGATTTCCTGGGCGTGGTGCAAAAGATGATCATATGTCCAAAGGAAGGTACTGACAATCTCAAGCCAGGCTCCTCAGCTAATCCTTGA 2013 0.4188 MDSPEKKQGLPSNEGVQDILYTELWRACAGSFVYVPRVDDRVFYFPQGHLEQVAAYTQNQPDSHLEIPVYDLPSKILCKIMNVELKAEAYSDEVYAQVTLVPEVQKDNLCFEEEVNIDQIPSRNAAYSFSKILTPSDTSTHGGFSVPKKYADECFPPLDMTLQTPAQEIVAKDLNGFEWRFRHIYRGQPKRHLLTSGWSLFVNAKKLVAGDSCIFVRGESGELRVGIRRAAENLSNISQSSSLISGHSMQLGILTNASNAVGNRTMFLVYYRPWTNPFEFIVHLQTYLKSTLQDYPIGTRVQMQHEVEESLRRLAGTIIGNEDIDSIRWPGSAWRRLKVQWDAIVEDKMHPERVCPWWIEPLESAKEKKQVPALPTKKKGHALLNQRSLPGISGFGKNDVHQNSAGPSSQTRRADGDLQGQDYSGLSPPQPLQRAPSTDIIRPSKVPIRGSRFGKENRNQHPFLKQDPLHKSLGRSMSLTHEDLSITSSNLTSIGSESLGMPSTESRDENDAPFGQPGSSSTFKLFGVNLIDSSPEIPSVNFVDLNKTSSLPSSPPMGVAPGKTCKKCRCVNNRSCTKVLKLGNALGRAVDLARFNGYTELIAELDSMFDFQGTLISGGSGWHVTCLDDEGDMMQLGDYPWQDFLGVVQKMIICPKEGTDNLKPGSSANP 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01921 670 Gene3D - 127 231 IPR015300 -
Gma03g01921 670 Gene3D - 295 368 - -
Gma03g01921 670 Pfam Auxin response factor 257 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma03g01921 670 MobiDBLite consensus disorder prediction 488 518 - -
Gma03g01921 670 MobiDBLite consensus disorder prediction 449 465 - -
Gma03g01921 670 CDD B3_DNA 128 229 IPR003340 GO:0003677
Gma03g01921 670 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Gma03g01921 670 PANTHER AUXIN RESPONSE FACTOR 11 666 - -
Gma03g01921 670 Gene3D - 570 663 - -
Gma03g01921 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 666 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma03g01921 670 SMART B3_2 129 231 IPR003340 GO:0003677
Gma03g01921 670 MobiDBLite consensus disorder prediction 387 471 - -
Gma03g01921 670 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Gma03g01921 670 ProSiteProfiles PB1 domain profile. 574 656 IPR000270 GO:0005515
Gma03g01921 670 MobiDBLite consensus disorder prediction 397 434 - -
Gma03g01921 670 SUPERFAMILY DNA-binding pseudobarrel domain 116 253 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01921 Gma-Chr3 45069751 45080265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01921 18 666 B3 DNA Binding Superfamily AT4G23980 38.336 8.61e-135 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma03g01921 B3 1.2e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01921 - - gsj:114407324 1359.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01921 03 45069751 45080265 Gma03g01921 03 45069751 45080265 ECH
Gma19g01960 19 48690115 48700778 Gma03g01921 03 45069751 45080265 GST