Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01918 ATGGCGGAAGGGAAGGAAGAGAGTAAATCTAGCGAGGAAAGTGTGAAGCTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAACCCGAACTGCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAGGTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCAATGCGTGTCACAATAAAAGGACGTTACCCGGGGCATCTAGTCCATTACAAGTGAAGTATGCAGATGGGGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGCTCTCAGCAAACGAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTACTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGGCTCCTGTAGGTTATGGGCTGATGCCGTACCGCATGCCACCGATGCAGAGTCAACACGGTTACCATAATATGATGCCTCACATGAATCAAGGAAATGCATTACGGCCTGATCTTGGCCCCAATATGAACCCTAGAAACTATCATGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCTATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATACTTCTCCTGGTTCAGTTTCACCTGCCAGTGGAAATAACAACCATGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGCTGAAGGACCACCTGGTGCCAACTTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATACCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATGCCAATTAGGAGGTAAGAAATTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1296 0.4421 MAEGKEESKSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRASRGCCFVICPSREEADKAVNACHNKRTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALTALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHPSLFGALPMSYVPPYNGYGYQAPVGYGLMPYRMPPMQSQHGYHNMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGLQHPMAYPTGMISPRPMNTSPGSVSPASGNNNHAASSGASKNSGGQAEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDTPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQGKPY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01918 431 MobiDBLite consensus disorder prediction 305 343 - -
Gma03g01918 431 Gene3D - 313 423 IPR012677 -
Gma03g01918 431 PANTHER RNA BINDING PROTEIN 7 418 - -
Gma03g01918 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Gma03g01918 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Gma03g01918 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Gma03g01918 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Gma03g01918 431 MobiDBLite consensus disorder prediction 306 337 - -
Gma03g01918 431 Gene3D - 101 192 IPR012677 -
Gma03g01918 431 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 7 418 - -
Gma03g01918 431 CDD RRM1_2_CELF1-6_like 16 92 - -
Gma03g01918 431 MobiDBLite consensus disorder prediction 193 208 - -
Gma03g01918 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Gma03g01918 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Gma03g01918 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Gma03g01918 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Gma03g01918 431 SMART rrm1_1 347 420 IPR000504 GO:0003723
Gma03g01918 431 SMART rrm1_1 104 179 IPR000504 GO:0003723
Gma03g01918 431 SMART rrm1_1 16 92 IPR000504 GO:0003723
Gma03g01918 431 SUPERFAMILY RNA-binding domain, RBD 103 426 IPR035979 GO:0003676
Gma03g01918 431 CDD RRM3_CELF1-6 348 420 - -
Gma03g01918 431 MobiDBLite consensus disorder prediction 188 209 - -
Gma03g01918 431 CDD RRM1_2_CELF1-6_like 104 179 - -
Gma03g01918 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Gma03g01918 431 Gene3D - 2 100 IPR012677 -
Gma03g01918 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Gma03g01918 431 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01918 Gma-Chr3 45042555 45047637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01918 345 421 Eukaryotic Initiation Factors Gene Family AT2G23350 36.364 2.98e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01918 K13207 - gmx:100813239 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01918 03 45042555 45047637 Gma03g01918 03 45042555 45047637 ECH
Gma19g01956 19 48666428 48671007 Gma03g01918 03 45042555 45047637 GST
Gma03g01918 03 45042555 45047637 Gma10g00213 10 1964091 1968033 PCT
Gma03g01918 03 45042555 45047637 Gma02g01385 02 16001613 16005522 PCT
Gma10g00213 10 1964091 1968033 Gma03g01918 03 45042555 45047637 PCT
Gma02g01385 02 16001613 16005522 Gma03g01918 03 45042555 45047637 PCT