Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01912 ATGGACGATTCTCAAGCATCCCAAAACCCTAGCTCGCGTTCTTCGTTCGTCTTTTACATCAGGATGGAGTCTCAGGTGAAGCACGCACTTGTTGTCAAAGTAATGGGTCGTACTGGATCCAGAGGACAGGTGACCCAGGTTAGAGTGAAGTTTCTGGATGATCAGAACCGTCACATCATGAGGAATGTTAAAGGACCAGTGAGAGAAGGAGACATTCTCACCCTACTCGAGTCTGAAAGGGAAGCTAGAAGGTTGCGCTAA 261 0.4789 MDDSQASQNPSSRSSFVFYIRMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01912 86 Hamap 30S ribosomal protein S28e [rps28e]. 22 86 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma03g01912 86 Pfam Ribosomal protein S28e 25 85 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma03g01912 86 PANTHER 40S RIBOSOMAL PROTEIN S28 22 86 - -
Gma03g01912 86 CDD S1_S28E 27 86 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma03g01912 86 SUPERFAMILY Nucleic acid-binding proteins 22 86 IPR012340 -
Gma03g01912 86 Gene3D - 20 86 IPR012340 -
Gma03g01912 86 ProSitePatterns Ribosomal protein S28e signature. 77 85 IPR028626 -
Gma03g01912 86 PANTHER 40S RIBOSOMAL PROTEIN S28 22 86 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01912 Gma-Chr3 45009827 45012227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01912 22 86 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 2.00e-35 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01912 K02979 - gmx:100818200 103.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01912 03 45009827 45012227 Gma03g01912 03 45009827 45012227 ECH