Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01910 ATGCCGGCTGGTCACGGTTTGAGATCCCGCACCAGAGATTCCTTCTCTCGTCCCTTCAGGAAGAAGGGTACCATCGCCCTCACCACATACCTCAGAACCTACCACGTCGGCGATTATGTCGACGTCAAGGTTAACGGCGCCGTCCACAAGGGAATGCCACACAAGTTCTACCATGGCCGCACCGGTCGCGTCTGGAATGTCACCAAACGTGCTGTTGGGGTCGAAGTCAACAAGCAGGTCGGCAACAGAATCATAAGGAAGAGGATTCACGTGCGTGTGGAGCATGTTATGCCATCAAGGTGCACTGAGGAGTTCCGCCTTAGGAAGATCAAGAATGATCAGCTCAAGGCTGAGGCCAAGGCCAAGGGTGAGAAGATCAGCACCAAGAGACAGCCTCAGGGTCCCAAACCAGGTTTCATGGTCGAGGGGGCAACGTTGGAGACAGTTACCCCTATTCCCTATGATGTCGTCAATGACCTCAAGGGAGGTTATTAG 495 0.5394 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHVGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAVGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEKISTKRQPQGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01910 164 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Gma03g01910 164 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Gma03g01910 164 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Gma03g01910 164 PANTHER 60S RIBOSOMAL PROTEIN L21 1 164 IPR001147 GO:0003735|GO:0005840|GO:0006412
Gma03g01910 164 MobiDBLite consensus disorder prediction 118 137 - -
Gma03g01910 164 Gene3D - 99 156 - -
Gma03g01910 164 PANTHER 60S RIBOSOMAL PROTEIN L21-1 1 164 - -
Gma03g01910 164 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01910 Gma-Chr3 44995443 44996656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01910 1 164 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 85.976 1.18e-105 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01910 K02889 - gmx:100305629 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01910 03 44995443 44996656 Gma03g01910 03 44995443 44996656 ECH
Gma19g01949 19 48627744 48632792 Gma03g01910 03 44995443 44996656 GST