Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01900 ATGTCGATATTATCAAGCATGGACATGCCTACCATTGATGTGGACCTTGGGCCTGAGAAGCTTGAAGATGAGAAACAGGGAGGTCCCTTGTTGCATTGTGATCTTTGTGACACAGAAGTAGTTCACAAGCTGGCTCAAATGTTCCTTCCAGGTCTAGCCAGTGCTTGTGTTGATAACACATCAGGAGATCTCTTCAAGACTCCGGGTTCAGTGGCTGTTGATTTGAGGAAGGAAATGATAGAGTATGTTACCCAAAGAAGTGAATCATTTGTTGCTGAGTCTGTTATCTTGGAAGGTAGTCCAGATGGTGAAGTATCGGACCATCCTTTTGATATCATTTCTAATTTGGTTGATGACTTTGTGAGTTCAAAGAGGAATCTGTTTAGCCGAGTTTCAGGATGGCTGCTGAGTGAAAAGAGGGAGGACAAAATAGATGATTTTGTTCAAGAGATGGAAATGAATGGGTTTTGGACACTTGACAGGAGAGAAATAATTGCAGAAACTTTGCTCAAGAATGTTGACTTTGAAAACTCATATCATTGCAACATGAGTTTTAATTCTGCGGAAGAACTTGCCAATCATGTTGATAACTGCAACTTTAGAACTATGATCTGCGAAAATGAGGGATGCAATTCCAGATTTTGCGCAGCTCATTTGAAGAATCACGACTCAACTTGTGCTTTCAAGATAATTGCATGTGAACAGAAGTGTTCTGATAGCATTATGAGACGTGAGATGGACAGGCATTGTATAACTGTTTGTCCAATGAAGCTTGTAAAGTGTCCTTTTTATGTTGTGGGTTGTAGGTCAGCTGTTGCACAATGTATGATTGAAAAACATTGTTTAGATGACGTTAATTCTCACTTGTGGCACTTGCTTAAAGGCATCTACAAGAAAGCATATGGGGATGATCTTAAACGACGAGTGGAGCAAATTGTACAGGCATCATCAAGCAGCCGTTTAGCAGAGGCTCGGGATGTTAGATCTTTAAACTTCATTGTCAAGGATATTGAAGCTAAGCTAGGACCTTTCAAAGTGAGTGCTGTGGAGAAAAATAATGGAGAGACTGTTACCAAGAATGGCCAAGGGGAAGGTGGTGAGACTGATATGAATGGCAGAGAAAAGAGCATGAAGGCTTCAGATATGGTCAATTCACCAGATAAAGCTGAATTGAGTGGCATGGTAAATATGAATAATGCAGAGAATACTACCAAGAATGAAGATAGGGAATCTGTTCCTCTTGAAAATAAAGGCTTTGAAGAGATTGCACAAACTTCAAATATGACAAATTTATCTGATAAAACTGAAGTTGGCCTCCCAAATGATGAGATCAAAGATGATGCAGATAAAAAGGATTTCAATTTTGCTGTAACTGACAACGTGTGCTGA 1389 0.3981 MSILSSMDMPTIDVDLGPEKLEDEKQGGPLLHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKTPGSVAVDLRKEMIEYVTQRSESFVAESVILEGSPDGEVSDHPFDIISNLVDDFVSSKRNLFSRVSGWLLSEKREDKIDDFVQEMEMNGFWTLDRREIIAETLLKNVDFENSYHCNMSFNSAEELANHVDNCNFRTMICENEGCNSRFCAAHLKNHDSTCAFKIIACEQKCSDSIMRREMDRHCITVCPMKLVKCPFYVVGCRSAVAQCMIEKHCLDDVNSHLWHLLKGIYKKAYGDDLKRRVEQIVQASSSSRLAEARDVRSLNFIVKDIEAKLGPFKVSAVEKNNGETVTKNGQGEGGETDMNGREKSMKASDMVNSPDKAELSGMVNMNNAENTTKNEDRESVPLENKGFEEIAQTSNMTNLSDKTEVGLPNDEIKDDADKKDFNFAVTDNVC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01900 462 ProSiteProfiles Zinc finger TRAF-type profile. 222 269 IPR001293 GO:0008270
Gma03g01900 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 286 IPR013083 -
Gma03g01900 462 MobiDBLite consensus disorder prediction 353 389 - -
Gma03g01900 462 Pfam TRAF-type zinc finger 222 280 IPR001293 GO:0008270
Gma03g01900 462 SUPERFAMILY TRAF domain-like 181 234 - -
Gma03g01900 462 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 387 - -
Gma03g01900 462 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 387 IPR043211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01900 Gma-Chr3 44907490 44912657 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01900 - - gmx:100819268 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01900 03 44907490 44912657 Gma03g01900 03 44907490 44912657 ECH
Gma19g01941 19 48552265 48556472 Gma03g01900 03 44907490 44912657 GST
Gma03g01900 03 44907490 44912657 Gma02g01554 02 31031601 31034668 PCT
Gma02g01554 02 31031601 31034668 Gma03g01900 03 44907490 44912657 PCT