Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01894 ATGCCAAAAGGAGAGTGGATGTCCACGCCTGTGAGTGGGAGAGCATTAGCTCTTGAGCATCCATTATGTCTCTCCCAAAAAAAAAGGCAAAATAAAAGAGATGTCATTATGGCCAACTATAAATATCGGGAGGAGCTAAAATTCTTAGTCTGGTCTCGTGCAAGTGTAACCCAAAACCCTAGCGGCGCCTGCTTTCTTCGTTCGTCTTTTGCATCAGCCATCAGGATGGAGTCTCAGGTGAAGCATGCTCTTGTTGTCAAAGTTATGGGTCGTACTGGATCCAGAGGACAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAGAACCGTCATATCATGAGGAATGTTAAAGGACCAGTGAGAGAAGGAGACATTCTCACCCTACTCGAGTCTGAAAGGGAAGCAAGAAGGTTGCGCTAG 423 0.4586 MPKGEWMSTPVSGRALALEHPLCLSQKKRQNKRDVIMANYKYREELKFLVWSRASVTQNPSGACFLRSSFASAIRMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01894 140 ProSitePatterns Ribosomal protein S28e signature. 131 139 IPR028626 -
Gma03g01894 140 Hamap 30S ribosomal protein S28e [rps28e]. 76 140 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma03g01894 140 SUPERFAMILY Nucleic acid-binding proteins 76 140 IPR012340 -
Gma03g01894 140 PANTHER 40S RIBOSOMAL PROTEIN S28 76 140 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma03g01894 140 Gene3D - 74 140 IPR012340 -
Gma03g01894 140 CDD S1_S28E 81 140 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma03g01894 140 Pfam Ribosomal protein S28e 79 139 IPR000289 GO:0003735|GO:0005840|GO:0006412
Gma03g01894 140 PANTHER 40S RIBOSOMAL PROTEIN S28 76 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01894 Gma-Chr3 44872022 44877672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01894 76 140 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 5.46e-35 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01894 K02979 - egr:104443388 107.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01894 03 44872022 44877672 Gma03g01894 03 44872022 44877672 ECH
Gma19g01933 19 48513901 48519751 Gma03g01894 03 44872022 44877672 GST