Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01887 ATGGCGCTTGATGATTATTGTACCCTGTGCAATGCATATCCTGAAACTCTAAGTCATGCTCTTGGTGATTGCACATGGGTAAGAGGGGCATGGAACAATCTGGGAATCAATGACACTTGGAATTTTTTCCAACATAATGTTCATAGGTCCTTGGTGCACGACAACAGTGCAAGAGATGAGTTTATTAAAGCTCTGCAACTTCATGCTTCGTTGGAATCAATGTTGCATGAATACCCTGCTGAAGACTTGGCCGCCTTTTGGAAAGCTAGGCTTGGCGGCATAGTCACTCACTCACATATTGAAACCGAAACCAAAAACCTCGCCGTCGACGACAACACGATGCGGAGCTTCAGGATGAGAAACTTGTTATCCAGTGTTAAAAAGAAAACCATCGAAAACAGAAACAAAACTTCACGAAACTGCATTTCTATTACAAAAGAATtagcacgtttagtggaagaagaagaagaagaagaagaagttaacgaggaaggcttcaacatcaaaagCTCTGCCCCGTCACACACTCACGGTGTTCAGCCCTTGGGGAATCTCTATCTGAACACAGGTTCCACCAACTCCAGAGACACTGGCTTAGGTAATCTTCATACCCTTTCGGATGATCTTGTTCTCGACATTCTCGGGTTTTTGGATGCTTCTTCCTTGGGGATTTTAGCCACTGTAAGCAAATCTTTCTACGTGTTCACCAACCACGAACCCCTTTTGGAGGAATCTCGGTGTATTGATAATTGGGGTGTTTTGAGGAATTGGGATAGGGATTATTTGGTGAGGTTGTGTGGTGATGTTAAGTTTTCAGTTGGGTCATTGGAGATGAAGCTTGGAGAGTATTTTGGGTACTCGGGTCAGGTTAGAGAGGAAAGGCCTTTGTATTTGTTTGATCCTAAGTTTGCCGAGAAAGTTTCGAAATTGGGCGATGATTATGATGTTCCGGTGTACTTTAGGGAGGACTTGTTTGGTGTTTTGGGCAACGAGAGGCCGGACTACAGGTGGGTTATTATTGGACCTTCCGGGTCTGGATCTTCTTTCCACGTTGATCAGAATTCGACTTCGGCTTGGAATGCGGTGATCAAGGGGTCCAAGAAGTGGATCTTGTTTCCTCCCGATGTGATTCCACCTGGCGTTCATCCCAGTCCTGATGGTGCGGATGCGGCATCTCCTGTTTCGATAATTGAATGGTTTATGAACTTCTATGGTGCAACCAAAAATTGGCAAAAGAAACCAATTGAGTGCGTATGTAAAGCTGGAGAGGTGATCTTTGTGCCTTGTGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAATTATGTCAGTAA 1352 0.4246 MALDDYCTLCNAYPETLSHALGDCTWVRGAWNNLGINDTWNFFQHNVHRSLVHDNSARDEFIKALQLHASLESMLHEYPAEDLAAFWKARLGGIVTHSHIETETKNLAVDDNTMRSFRMRNLLSSVKKKTIENRNKTSRNCISITKELARLVEEEEEEEEVNEEGFNIKSSAPSHTHGVQPLGNLYLNTGSTNSRDTGLGNLHTLSDDLVLDILGFLDASSLGILATVSKSFYVFTNHEPLLEESRCIDNWGVLRNWDRDYLVRLCGDVKFSVGSLEMKLGEYFGYSGQVREERPLYLFDPKFAEKVSKLGDDYDVPVYFREDLFGVLGNERPDYRWVIIGPSGSGSSFHVDQNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADAASPVSIIEWFMNFYGATKNWQKKPIECVCKAGEVIFVPCGWWHLVINLEESIAITQNYVS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01887 450 SUPERFAMILY Clavaminate synthase-like 246 449 - -
Gma03g01887 450 Pfam F-box domain 205 235 IPR001810 GO:0005515
Gma03g01887 450 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 168 242 - -
Gma03g01887 450 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 246 450 - -
Gma03g01887 450 Coils Coil 144 164 - -
Gma03g01887 450 ProSiteProfiles JmjC domain profile. 305 450 IPR003347 -
Gma03g01887 450 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 168 242 - -
Gma03g01887 450 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 246 450 - -
Gma03g01887 450 Pfam Cupin-like domain 288 447 IPR041667 -
Gma03g01887 450 SMART cupin_9 296 449 IPR003347 -
Gma03g01887 450 SUPERFAMILY F-box domain 197 263 IPR036047 GO:0005515
Gma03g01887 450 Gene3D Cupin 229 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01887 Gma-Chr3 44823400 44826578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01887 249 450 Glycosyltransferase AT1G78280 42.453 1.25e-48 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma03g01887 Cupin_8 1.2e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01887 - - gmx:100817138 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01887 03 44823400 44826578 Gma03g01887 03 44823400 44826578 ECH
Gma19g01927 19 48461525 48464238 Gma03g01887 03 44823400 44826578 GST