Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01879 ATGCATTCCCAGAAAGTTGTAGAGATGGAAGACAAGACAGAAAGTCATATGAGTTCAGCTGCGGCCTTTGTTGAAGGGGGGATTCAAGAATCCTGTGATGATGCTTGCAGCATATGCCTTGAGGAGTTTGGTGCAAGTGATCCTTCGACGGTCACTACCTGCAAGCATGAGTTTCATCTGCAGTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAACCTATTAGCTTGAAGGATCCTACTAGTCAGGAATTGTTTGAGGTAGTAGAGCAGGAGAGAAGCTTGAGGGCTACCCCATCAAGAAATGCTGCTATTTTTCATCACCCTGCCTTTGGAGATTTTGAGTTGCAGCATTTACGCATGAGTCTAAATGATGCTGATTTTGAAGAGAGAATTATTCAACATTTAGCTGCTGCTGCAGCAATGAGGAGAGCTAACCAACTTGGTTGGAGGGAAGGGCAGCGAGCTCGTTCATCAGCTCATGGTCATCCACAATTCTTAGTGTTCTCTAATCAGCCTATTGCACCTTCATCAGTTGCTGGAGGAGAAAATGACCCAACTGCAATTCCTAATAGAAGTCCATCTACCCCAATAACATCCGTTGGAAATGAAGCATCGCAGCAGATCCTGCACCTTCAAACTCAAAGTTCTTCTTCAGCTTCTGGATCTCCTGTCATGGCTACAAATCCTCGAGGAATTTACTCTAATGAAAGAGGCTCTACTGCTTGTTCTTCACCAGCAAACCAAGATAGAGCAGAGCCATCAGAGTTGCAGTCATTTTCTGATTCTCTGCGATCCAGACTTAATGCAGTGTCCATGAGATACAAAGAGTCAATCTCAAAAGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCGTAGTTCTTCCATGTCAAAACTTGGTTCAGAAACAAGGAGGAGAGAGATAAATTCTGGAATTGCTAGTGTATCCCGATTGATGGAATCCCTTGAAACTAGTGAAAATAATAGAGTTGTGGGTACTTCTTTGTCAAATCATACGGAGGGTTGTTCCATAGGAGGGGTGAGCAACCAGAACAATGTTGAAGCTAGAGGGGAGAACTCTTCACATGATGACAATACTCCAGCTGCTTGTTCTGCTAACTCACATTTAAATTGA 1152 0.4427 MHSQKVVEMEDKTESHMSSAAAFVEGGIQESCDDACSICLEEFGASDPSTVTTCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELFEVVEQERSLRATPSRNAAIFHHPAFGDFELQHLRMSLNDADFEERIIQHLAAAAAMRRANQLGWREGQRARSSAHGHPQFLVFSNQPIAPSSVAGGENDPTAIPNRSPSTPITSVGNEASQQILHLQTQSSSSASGSPVMATNPRGIYSNERGSTACSSPANQDRAEPSELQSFSDSLRSRLNAVSMRYKESISKGTRGWKERLFSRSSSMSKLGSETRRREINSGIASVSRLMESLETSENNRVVGTSLSNHTEGCSIGGVSNQNNVEARGENSSHDDNTPAACSANSHLN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01879 383 MobiDBLite consensus disorder prediction 342 383 - -
Gma03g01879 383 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Gma03g01879 383 SUPERFAMILY RING/U-box 28 84 - -
Gma03g01879 383 MobiDBLite consensus disorder prediction 179 266 - -
Gma03g01879 383 SMART ring_2 36 76 IPR001841 -
Gma03g01879 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 85 IPR013083 -
Gma03g01879 383 Pfam Ring finger domain 35 76 IPR001841 -
Gma03g01879 383 MobiDBLite consensus disorder prediction 193 266 - -
Gma03g01879 383 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 6 380 - -
Gma03g01879 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 6 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01879 Gma-Chr3 44755188 44760420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01879 33 84 C3H Transcription Factor Family AT4G00335 44.231 1.66e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01879 K19043 - gmx:100800419 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01879 03 44755188 44760420 Gma03g01879 03 44755188 44760420 ECH
Gma19g01919 19 48401763 48409064 Gma03g01879 03 44755188 44760420 GST
Gma03g01879 03 44755188 44760420 Gma10g00787 10 10613856 10617269 PCT
Gma03g01879 03 44755188 44760420 Gma02g01814 02 42067306 42071654 PCT
Gma10g00787 10 10613856 10617269 Gma03g01879 03 44755188 44760420 PCT
Gma02g01814 02 42067306 42071654 Gma03g01879 03 44755188 44760420 PCT