Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01867 ATGCAAACTGTTTATCTTAAAGAGCACGAAGGAAATGCGCACAATTTTGTGGGCACGTTGTCTTCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCTGTTCATCAGGGAGAGTCTTGTGGCCAAGTGAAACCCTTTTCATTGGAGCTGCCAAACTGCATAGACCAACTTGCTGCCACTAAGCCACTAGCAAGAGGAGCTGACCAAGTGTTGGGTAAAGGGCACATAACTCAGTTTACAATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAAAAGCTTCAGACAACCATGTCACTGCAGTCATCGCTTACTGATCCACAGTCTCGTTTTGAGATAGGGTTTAGTCTGCCCACGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGAACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGACTAAACGTCGCAAGCCCTATATGCACGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGCTTCTTGAACACTAAGAATTCTGTTGACGGAAATGGTAAAATTGGAAATGAAGTGCATAAAACTGTTGGTGAACAATTGCAGTCTAGTGGCTCTCAGAGTTCTGAATTCCTTCAATCTGAGGTTGGAACTTTTAATTCATCAAAAGAGACTAATGGAAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGCTTTTCTCTCAATCATCTTGGATCTGCTGTCCACTCTTTTGCAGACATGATAGATGGTGGGCGCGGTATGATCATACCCACCAAATGGGTTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGA 987 0.4428 MQTVYLKEHEGNAHNFVGTLSSAASAPWWSAFGSQSVHQGESCGQVKPFSLELPNCIDQLAATKPLARGADQVLGKGHITQFTIFPDDCKMSDDAQKLQTTMSLQSSLTDPQSRFEIGFSLPTICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDEPIYVNAKQYHGIIRRRQSRAKAVLDHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKNSVDGNGKIGNEVHKTVGEQLQSSGSQSSEFLQSEVGTFNSSKETNGSSPNISGSEVTSMYSRGGLDSFSLNHLGSAVHSFADMIDGGRGMIIPTKWVAAAGNCCNLKV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01867 328 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
Gma03g01867 328 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 2 327 IPR001289 GO:0003700|GO:0006355
Gma03g01867 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 160 215 IPR001289 GO:0003700|GO:0006355
Gma03g01867 328 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Gma03g01867 328 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
Gma03g01867 328 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Gma03g01867 328 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 2 327 - -
Gma03g01867 328 Gene3D - 159 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01867 Gma-Chr3 44644896 44649803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01867 20 328 CCAAT-HAP2 Transcription Factor Family AT3G05690 44.512 8.86e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma03g01867 CBFB_NFYA 6.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01867 K08064 - gmx:100527677 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01911 19 48289575 48293923 Gma03g01867 03 44644896 44649803 GST
Gma03g01867 03 44644896 44649803 Gma10g00766 10 10198351 10202091 PCT
Gma03g01867 03 44644896 44649803 Gma02g01842 02 42569918 42575404 PCT
Gma10g00766 10 10198351 10202091 Gma03g01867 03 44644896 44649803 PCT
Gma02g01842 02 42569918 42575404 Gma03g01867 03 44644896 44649803 PCT