Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01866 ATGGCTGCTGTTTCCTCTTCTATCTGCAACAGAATATACAACCTTTCCTTCACACACCCTTCCCTTTCACTCACCACCTGCAACTTCCGTCAAAGACCCATATCCCAAAAACCATTCACTCTCAACCTCAAGTCCCAAAGTTTCACTCTTTCCTTTTTCCCACTTCACCGTCTTCCCCCTCCTTCCGCTGCCTTCGATGGGTTTGAAGTAGCTCAAGACACCACAGAGTTCCAACAAGACGAACCAGAAACAGAACCTGTGGAAAAAACAGAACAAGAGGAAGAGCAAAAGGTTTCTGATTCATACGATGCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATCACTAATTCCGCATTGGCTGAGCTCTTTGGAGAAGCTGGCACCGTGGCGTCTGTTGAGATTATGTATGATCGTGTCACGGACAGAAGCAGGGGATTTGCATTTGTTACAATGGGGAATGTTGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCGCAAGTTGGTGGTAGGACTGTTAAGGTAAACTTCCCAGAGGTACCCAAAGGAGGGGAAAGGTTGGTAATGGGGTCCAAAATACGGAACAGTTACAGAGGTTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGCTGGGGACTGACCTCACAGGGTCTTAGGGAAGCTTTTGCTGAGCAGCCAGGCGTATTGAGTGCCAAGGTCATCTATGAGAGGGACAGTGGAAGATCTCGAGGTTTTGGGTTTGTTTCTTTTGAAACTGCTGAATCTGCACAGGCTGCTTTGGACATTATGAATGGTGTGGAGGTACAAGGTCGGCCCTTGCGGTTGAATTTGGCTGAAGCAAGGGCACCTTCATCTCCTCCAGTAATTCAGAAAAATGTAGGAAGCAATGTTGAAAGCTCGGAATTGGTGTCTAGTGCCAGCACATAA 945 0.4698 MAAVSSSICNRIYNLSFTHPSLSLTTCNFRQRPISQKPFTLNLKSQSFTLSFFPLHRLPPPSAAFDGFEVAQDTTEFQQDEPETEPVEKTEQEEEQKVSDSYDAGRLYVGNLPYSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGSKIRNSYRGFVDSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDIMNGVEVQGRPLRLNLAEARAPSSPPVIQKNVGSNVESSELVSSAST 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01866 314 PANTHER OS02G0815200 PROTEIN 1 296 - -
Gma03g01866 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 177 IPR000504 GO:0003723
Gma03g01866 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 280 IPR000504 GO:0003723
Gma03g01866 314 SUPERFAMILY RNA-binding domain, RBD 105 287 IPR035979 GO:0003676
Gma03g01866 314 MobiDBLite consensus disorder prediction 74 100 - -
Gma03g01866 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Gma03g01866 314 CDD RRM_HP0827_like 106 182 - -
Gma03g01866 314 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 1 296 - -
Gma03g01866 314 Gene3D - 66 188 IPR012677 -
Gma03g01866 314 MobiDBLite consensus disorder prediction 82 100 - -
Gma03g01866 314 SMART rrm1_1 209 282 IPR000504 GO:0003723
Gma03g01866 314 SMART rrm1_1 106 179 IPR000504 GO:0003723
Gma03g01866 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Gma03g01866 314 Gene3D - 197 292 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01866 Gma-Chr3 44641113 44643599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01866 92 287 Eukaryotic Initiation Factors Gene Family AT3G16380 33.500 2.80e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01866 - - gmx:100799014 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01910 19 48286233 48288081 Gma03g01866 03 44641113 44643599 GST
Gma03g01866 03 44641113 44643599 Gma20g00824 20 33244797 33252652 PCT